Gene loci information

Transcript annotation

  • This transcript has been annotated as GATOR complex protein Iml1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14389 g14389.t3 TSS g14389.t3 228204 228204
chr_4 g14389 g14389.t3 isoform g14389.t3 228456 236686
chr_4 g14389 g14389.t3 exon g14389.t3.exon1 228456 228546
chr_4 g14389 g14389.t3 cds g14389.t3.CDS1 228456 228546
chr_4 g14389 g14389.t3 exon g14389.t3.exon2 228838 229057
chr_4 g14389 g14389.t3 cds g14389.t3.CDS2 228838 229057
chr_4 g14389 g14389.t3 exon g14389.t3.exon3 229478 229596
chr_4 g14389 g14389.t3 cds g14389.t3.CDS3 229478 229596
chr_4 g14389 g14389.t3 exon g14389.t3.exon4 230085 230740
chr_4 g14389 g14389.t3 cds g14389.t3.CDS4 230085 230740
chr_4 g14389 g14389.t3 exon g14389.t3.exon5 230799 230846
chr_4 g14389 g14389.t3 cds g14389.t3.CDS5 230799 230846
chr_4 g14389 g14389.t3 exon g14389.t3.exon6 230909 231839
chr_4 g14389 g14389.t3 cds g14389.t3.CDS6 230909 231839
chr_4 g14389 g14389.t3 exon g14389.t3.exon7 231894 232022
chr_4 g14389 g14389.t3 cds g14389.t3.CDS7 231894 232022
chr_4 g14389 g14389.t3 exon g14389.t3.exon8 233160 233377
chr_4 g14389 g14389.t3 cds g14389.t3.CDS8 233160 233377
chr_4 g14389 g14389.t3 exon g14389.t3.exon9 233434 233820
chr_4 g14389 g14389.t3 cds g14389.t3.CDS9 233434 233820
chr_4 g14389 g14389.t3 exon g14389.t3.exon10 233886 234086
chr_4 g14389 g14389.t3 cds g14389.t3.CDS10 233886 234086
chr_4 g14389 g14389.t3 exon g14389.t3.exon11 234336 234425
chr_4 g14389 g14389.t3 cds g14389.t3.CDS11 234336 234425
chr_4 g14389 g14389.t3 exon g14389.t3.exon12 234716 234783
chr_4 g14389 g14389.t3 cds g14389.t3.CDS12 234716 234783
chr_4 g14389 g14389.t3 exon g14389.t3.exon13 235027 235128
chr_4 g14389 g14389.t3 cds g14389.t3.CDS13 235027 235128
chr_4 g14389 g14389.t3 exon g14389.t3.exon14 235182 235827
chr_4 g14389 g14389.t3 cds g14389.t3.CDS14 235182 235827
chr_4 g14389 g14389.t3 exon g14389.t3.exon15 235895 236686
chr_4 g14389 g14389.t3 cds g14389.t3.CDS15 235895 236686
chr_4 g14389 g14389.t3 TTS g14389.t3 236738 236738

Sequences

>g14389.t3 Gene=g14389 Length=4698
ATGAAACCTTATCGTCTTGTTCATCATCAGAGGTCAGTTTACAATGAAGATTTGTTGTTG
AATCCAAAAGAGCATCCAAATATCAAAAAGGGTGATATTGTAGAAATTTTTCATCAAGAT
GAAAATGATGAAAAAGGAAAACAACGCTGTCGTTTGCTTCTTCAAGTTTCACTGACAAAA
GACACTCAAGGAAGAAATGATTACATCAGTGTGGAATCTTCAATAGCTTTAACTTTTAAT
TTAAAGAACTATGGTGATGTTTTCATGCAAGTCGTTAATCCAGCTAGTGTTGCCTTAGAT
AGTGTAGAAATAACGTTCAAAGATCAATATATGGGACGATCAGAAATGTGGCGTTTAAAG
CAGCATCTTACAAAAACCTGTGTCTACATTAATAAAAAAATCGAATACTGTGATTCCATT
CGTTGTCAAGTTTATGAAATGTGGAGTTTTGGAGAAAGAGTATCATGTGGAGTTATTACA
GAAGATACAAAAGTTGTTTTTAGGAGTAGTACCTCCATGGTTTACCTATTTATGCAAATG
AGCTCTGAAATGTGGGACTTTGATATTCATGGAGACCTTTATTTTGAAAAGGCTGTAAAT
GGTTTTTTGACAGACCTTTTTGCAAAATGGAAAAAACAAGGCAGCAATCATGAAGTCACA
ATTGTGTTATTTTCACGAACATTTTATGCTGCAAAAAATCTGGAGGAATTTCCTGAACAT
ATGCGAGATTGTTTGCAAATGGATTATAAAGGAAGATTTTATGAGGATTTTTATCGTGTA
GCCATTCAAAATGAAAGAAACGATGATTGGAGCACAATTTTAGTGCAACTTAGACGTCTT
TTTACATCATACAAAGATATTGTATTGAAATATCATGAAAGACCAGGAGAAATAATACCA
ATGGCAATAAATTCAACCGCTGCCCAGGGCAATTTTCTTGAAGTTTTAAATATCTCATTG
AATGTCTTTGAAAAGCATTATCTTGATAGAAGTTTTGATCGAACTGGTCAATTATCAATT
GTAATAACACCAGGAGTTGGCGTATTCGAAGTAGATCGAGAGCTTACTAATATTACTAAG
CAGAGAATTATTGATAATGGCGTTGGAAGTGATTTAGTTTGTGTTGGTGAACAGCCATTA
CATGCAGTACCTCTTTTGAAATTTCACAACAAAGATCCTTCATTAAATTCAGTAGATGAT
TATTCAATGCCACACTGGGTTAATCTGAGTTTTTATTCTACCAATAAAAAAGTCGCTTAT
TCAACTTTCATACCACGTATTAAATTACCTCCACAAATTCGTAAAAATGAAGATGACAAT
GAAGTGTTGCATGTAAAAAAACTCAAAGAAGAAATTAATTTTTATACTGACACAAATACT
GAATATATTCATAATTCACTTTTTGATTATGATGCATATGATGCACAAGTTTTTGCATTT
CCCAGTCATACAACACTTATACAAAAAACTAAAAAATCAAGTATAGATGGTTTCAATTCA
TATTCAGTGTCAGTGACATCAAATAATGGCAGCAATGGATTTCAACGAGTCCGTAAGATG
TCTGATCCTGATATTTATCATGCTTGCAGTTTTTCAGAAACAAATGGTGCTTTACGTGAA
TCATTATCACAATCAACGTTGACAGCTACAAAAACAAGAAAATTGCTACCAGTACGTACT
GGACGAGCACTTATAAATCCATTTGATCCATCACATGTGACTATCAAATTGACTTCTAAT
AGAAGAAGATGGTCGCACATTTTTCCAAAAGGTCCAACAGGTTTTTTAATTCAACAACAT
CATTATCAAGCTGTTCCGTCAAAAACTGTACAAGAATCTGAAATGGTGCGCGACGATTCA
TTTAATTTTATCAATATCGATGATTATAATCACACTGCCATGTGTACACACAACAATAGT
AATGGAAATATCAATGGCAATATGGGTAGAAGACAACATAGCAGCTTATCAACAAGATCT
TTTGAAAGATTCGAAGAAGATTTCAATAGATTAAGTGCAAATAATACTCCAATAGACAGA
GGAAGTTTTCTAAATGATTCTTCATTTTTAAAAACAAGAAAAGCTTCTGCTTTGAGTTCA
CCATTTAATCAACCAGCAGCAACATCAACACCATCAAAAACACTTCTTTGGGGAGCTACA
GGTGAACAATGTTGGACACCTCAATTGACTACTGGAGTGGACTGGAAGTCATTGACAATT
CCGGCATGTCTTCCAATCACCACCGATTATTTTCCGGATAAACGATCGCTCAATAATGAC
TACGTTTTATCAATCTACACATTACTGCCAGATGATGTTAATGCTGATTTTATGCGATTA
AGAGCTGTTCAGAGAAAGCCATTATCGACTGAAGAAGTTTTTAAAGAGCTTGTGTCACAA
AGATTAGCTCAAGGATTTCAATTAATAATTCTTCCTGATCATCTTCAAACACAAAATAAA
CCAGCAACTGCACCTTGCTGTGGTGGAAGTATACAAATTAAAGGGTCTGTAGTAGCACCA
ATAACAATTGAACAGACTAAAGAATATTTACTTTCGATTGGACGAATATTTCATAAAATT
GCCCTAAATGATAAGGAAATAAAAATTACAAGATATCGACCACGCCATCCTTATCCTCCT
ATAAATGTTGATTATCGTTATCGTTTTCATGCACCAAATCATGATACTTATGAAGTCTCA
GGTGTGAATTTTACAACTGAAAAACTAGAAAACTTTAATTGGAATCATATGGATCAATAT
ATTTGTACCAGAGGCGATTTTGATTTTATGCTACTCGAGCAAATGAAATATTGGCGATAT
AGAATGTATTTACTGCCTAAAGAAGATCTAATAATGAAAAGAATTATGGAGGAAAATATT
GAAAATTGTGACATCTATACACAGGAAACAACTTTAGCTATGCAAAAAATTTTAATTGAA
GATTTTTTGAAATTTGTTGAAACTCATTTAAATAAGATTAAAAGAGTGAAGAAACCAAAA
GGAAGTCCGACAACTTCACACTTGACGAGAAGAAGACACAGTACGAGTACGAGTATTCAT
TCGAGACCACCGGCTGTAAATCAAAATCAGGCACTTCAAAATTCTCCATTCAGAGAAAGA
GTTGGCAGCAATCGTTTTCCCGAAAGATTAAGACCAAGATCAGGATCTAAAATTGAAACG
CGATCGGCTTTAATGCAGCTGCAGGCTTCGATGGCTGAGAAAAATTCGAAAACAGAAAAT
AATGATGACAATGATGATTGTTTTGCTCCTGATCCACCGAAATTCAAATCATCATCACCC
ATTAATGAGATATTTGATGCCTTTAAAAATCCAAATACTGGTGTTGGATTTCTTGAACCA
TTGCCGAGTATGCCTTCACTTACCTTTTCATCTTATGATGCTATCATATGGATTTTCAAT
CGAATTGAAGATGTCACTAATCCATTAGATATTTTGGAAACAATGAAAGAACAACGGTTA
ATTTGTCATGCTAGTGGAGATTTTAATATGCCAATTATTCCTGGTTTTTATATGTATTAC
ATAGCACAACAAGATGTCAATTCATCAGATTATCGAGCACCGTTGGGAGATCGAGATGCA
TTTAGTTTTGAATGGATGGAAGTAGAAATTCCAATGAAATATATTATGTCAACATTAAAA
CCATCAGTTGCTACTAAAACTACACCCAATGAAAATGATGTGCCAGCATTTTTGAAAGAG
GAAATCGAGAGAAGAGATTTAGATGGAAAATTGTACAAACATTCGCATTTAGAAGTTGAT
TTATCTGCAAAAAGTGACAGAATTGAATGGGGTCATGCAAGATATCACAAACATTTTATT
CCTGGGCATGCCTTTGAAATTGTAGTTCAATGGTTAGTTGCATCTGGACCTATTGTTTAT
GATCTGATTTACAACTGGAGTAGAAAAGCAACACAATGTAGTTATCAATTGGTTCCAATT
CCATGCGATCCTCTTGCGGAACCTTTTAGTTTATTTGAAAAATCAGATCCACTTCGAGGT
CCAATTTTTGTGCCACTAAATATTGATTGTCTACATCAAAATCGTTCAAGCATTTTTGAA
GATTTTAAGCGTGATACATGGGGTGAAAGGCTGCTTTTATTTCAAGAAGAAATTGCTAAA
CGTTTTGGTTTTATTCCTAGAGAATGTGAAACTAAAACCGGTTCAAATGATATCACACCA
GATTGGCAATACATTCATACTAGTGGCAATATGTTTGTTGTAATAACTTCATCAACCAAT
AAAGTACGTAACACAATGAGACGTTTAGGAATGGGTAATGGTAGTCATTCTAGTCCAACT
GATAGCTTAAAATCCCAGAAGCGTCTTAAAAATTATTATCATGTTCAACAACAACAACAA
CAAACTTCAGTACCACAAAAAGAAAATTATATTAATAGACATGTACAAAATAATTCTAAT
GGCAGTCGAGATTCAGATGAAGAAGGCTTTAGTAGCATGCAAAGGAAACATCCAATTGGA
TTTCTTTGGCAATGGAATCATATGATTGCTAATAAAAAATGGAAATCATTGTCTATCAAT
GGAACAGATGAAATATTTCAACTACGGATGCTACGTGACTTTAAAAATTTTTGCTCTAAT
GCTGATGGAAGGCTTATGAAATTTTGGGATCAAGCTTGGGAAAAGAAAGAAAAATTGTCA
CTATTAGGTGCAAATTAA

>g14389.t3 Gene=g14389 Length=1565
MKPYRLVHHQRSVYNEDLLLNPKEHPNIKKGDIVEIFHQDENDEKGKQRCRLLLQVSLTK
DTQGRNDYISVESSIALTFNLKNYGDVFMQVVNPASVALDSVEITFKDQYMGRSEMWRLK
QHLTKTCVYINKKIEYCDSIRCQVYEMWSFGERVSCGVITEDTKVVFRSSTSMVYLFMQM
SSEMWDFDIHGDLYFEKAVNGFLTDLFAKWKKQGSNHEVTIVLFSRTFYAAKNLEEFPEH
MRDCLQMDYKGRFYEDFYRVAIQNERNDDWSTILVQLRRLFTSYKDIVLKYHERPGEIIP
MAINSTAAQGNFLEVLNISLNVFEKHYLDRSFDRTGQLSIVITPGVGVFEVDRELTNITK
QRIIDNGVGSDLVCVGEQPLHAVPLLKFHNKDPSLNSVDDYSMPHWVNLSFYSTNKKVAY
STFIPRIKLPPQIRKNEDDNEVLHVKKLKEEINFYTDTNTEYIHNSLFDYDAYDAQVFAF
PSHTTLIQKTKKSSIDGFNSYSVSVTSNNGSNGFQRVRKMSDPDIYHACSFSETNGALRE
SLSQSTLTATKTRKLLPVRTGRALINPFDPSHVTIKLTSNRRRWSHIFPKGPTGFLIQQH
HYQAVPSKTVQESEMVRDDSFNFINIDDYNHTAMCTHNNSNGNINGNMGRRQHSSLSTRS
FERFEEDFNRLSANNTPIDRGSFLNDSSFLKTRKASALSSPFNQPAATSTPSKTLLWGAT
GEQCWTPQLTTGVDWKSLTIPACLPITTDYFPDKRSLNNDYVLSIYTLLPDDVNADFMRL
RAVQRKPLSTEEVFKELVSQRLAQGFQLIILPDHLQTQNKPATAPCCGGSIQIKGSVVAP
ITIEQTKEYLLSIGRIFHKIALNDKEIKITRYRPRHPYPPINVDYRYRFHAPNHDTYEVS
GVNFTTEKLENFNWNHMDQYICTRGDFDFMLLEQMKYWRYRMYLLPKEDLIMKRIMEENI
ENCDIYTQETTLAMQKILIEDFLKFVETHLNKIKRVKKPKGSPTTSHLTRRRHSTSTSIH
SRPPAVNQNQALQNSPFRERVGSNRFPERLRPRSGSKIETRSALMQLQASMAEKNSKTEN
NDDNDDCFAPDPPKFKSSSPINEIFDAFKNPNTGVGFLEPLPSMPSLTFSSYDAIIWIFN
RIEDVTNPLDILETMKEQRLICHASGDFNMPIIPGFYMYYIAQQDVNSSDYRAPLGDRDA
FSFEWMEVEIPMKYIMSTLKPSVATKTTPNENDVPAFLKEEIERRDLDGKLYKHSHLEVD
LSAKSDRIEWGHARYHKHFIPGHAFEIVVQWLVASGPIVYDLIYNWSRKATQCSYQLVPI
PCDPLAEPFSLFEKSDPLRGPIFVPLNIDCLHQNRSSIFEDFKRDTWGERLLLFQEEIAK
RFGFIPRECETKTGSNDITPDWQYIHTSGNMFVVITSSTNKVRNTMRRLGMGNGSHSSPT
DSLKSQKRLKNYYHVQQQQQQTSVPQKENYINRHVQNNSNGSRDSDEEGFSSMQRKHPIG
FLWQWNHMIANKKWKSLSINGTDEIFQLRMLRDFKNFCSNADGRLMKFWDQAWEKKEKLS
LLGAN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g14389.t3 MobiDBLite mobidb-lite consensus disorder prediction 995 1044 -
7 g14389.t3 MobiDBLite mobidb-lite consensus disorder prediction 995 1017 -
5 g14389.t3 MobiDBLite mobidb-lite consensus disorder prediction 1018 1040 -
4 g14389.t3 MobiDBLite mobidb-lite consensus disorder prediction 1457 1491 -
8 g14389.t3 MobiDBLite mobidb-lite consensus disorder prediction 1457 1487 -
3 g14389.t3 PANTHER PTHR13179 DEP DOMAIN CONTAINING PROTEIN 5 4 524 0.0
2 g14389.t3 PANTHER PTHR13179 DEP DOMAIN CONTAINING PROTEIN 5 521 1558 0.0
1 g14389.t3 Pfam PF12257 Vacuolar membrane-associated protein Iml1 102 388 1.6E-111

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005096 GTPase activator activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values