General information for g14390.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glycerol-3-phosphate phosphatase.
Parent gene
- The parent gene g14390 is located on chr_4: 245391..247021 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14390 | g14390.t3 | TTS | g14390.t3 | 243553 | 243553 |
| chr_4 | g14390 | g14390.t3 | isoform | g14390.t3 | 243568 | 244593 |
| chr_4 | g14390 | g14390.t3 | exon | g14390.t3.exon1 | 243568 | 243776 |
| chr_4 | g14390 | g14390.t3 | exon | g14390.t3.exon2 | 243841 | 243934 |
| chr_4 | g14390 | g14390.t3 | exon | g14390.t3.exon3 | 243991 | 244384 |
| chr_4 | g14390 | g14390.t3 | cds | g14390.t3.CDS1 | 244019 | 244384 |
| chr_4 | g14390 | g14390.t3 | exon | g14390.t3.exon4 | 244440 | 244593 |
| chr_4 | g14390 | g14390.t3 | cds | g14390.t3.CDS2 | 244440 | 244535 |
| chr_4 | g14390 | g14390.t3 | TSS | g14390.t3 | NA | NA |
Sequences
>g14390.t3 Gene=g14390 Length=851
CCCTAGTTATAATAATGTTATCGAAGGAAGTAATACTGTCATCAATAGACTTATTGAAAT
GGGCAAACGTGTCTATTTCATTACCAATAATAGCACAAGAACTCGTGAAGAGTTGGCTGA
AAAGGCTAAAATCATGGATTTCAATGTTGGATTGGATAATATGATATCAACATCATATCT
TGCTGCTCATTATCTTAAATCACAAAACTTTAATAAAAAAGTTTATATCGTTGGTAGTAG
TGGTATTTCACGTGAACTTGACGCTGTTGGAATAAAACATACAGGAGTTGGCCCAGATTT
TCATACTGGATCATTAATGGCTTACATGAATGAAAATTTGGTGTTAGATCCAGAAATTGG
TGCAGTTATAGTTGGTTTTGATGAACATATTAGTTTCCCAAAATTAATACAAGCAGCAAC
ATATTTAAATGAAAAGTCAACAATATTTATTGCTATCAATACTGATGAAAGGTTTCCAAA
CAAAAAAAAACGTTATACCTGGAACTGGTTCCATAGTTAAAGCAGTAGAAACTTGTGCAG
AAAGAAAAACTATTGTTATGGGAAAACCTGAAAACTGGCTTTGTGACATTTTCTTCAAAG
ATGACATCAAAAATAATAGTAATAGATTTTTGATGATCGGAGATCGACTTAATACAGATG
TTTTATTTGGAAAAAAAAACAATTTACAAACGCTTTTAGTTGAAAGTGGAGTTCATAAAA
TTGATAAAGTTAAGCAAATTATTGAATATCTTGAGAAAAATACAGAACTAGAAAGAAGAG
AAGATTTAGTTAATCAAATTCCCGATTATTTTGTTACTAAATTAGGAGATCTTTTAAATA
ATTTTGAATAA
>g14390.t3 Gene=g14390 Length=153
MGKRVYFITNNSTRTREELAEKAKIMDFNVGLDNMISTSYLAAHYLKSQNFNKKVYIVGS
SGISRELDAVGIKHTGVGPDFHTGSLMAYMNENLVLDPEIGAVIVGFDEHISFPKLIQAA
TYLNEKSTIFIAINTDERFPNKKKRYTWNWFHS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14390.t3 | Gene3D | G3DSA:3.40.50.1000 | - | 35 | 149 | 0 |
| 2 | g14390.t3 | PANTHER | PTHR19288 | 4-NITROPHENYLPHOSPHATASE-RELATED | 2 | 144 | 0 |
| 3 | g14390.t3 | PANTHER | PTHR19288:SF75 | FI11325P-RELATED | 2 | 144 | 0 |
| 1 | g14390.t3 | Pfam | PF13344 | Haloacid dehalogenase-like hydrolase | 2 | 73 | 0 |
| 4 | g14390.t3 | SUPERFAMILY | SSF56784 | HAD-like | 1 | 144 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
