General information for g14410.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Short-chain specific acyl-CoA dehydrogenase, mitochondrial.
Parent gene
- The parent gene g14410 is located on chr_4: 356223..357445 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14410 | g14410.t10 | TTS | g14410.t10 | 355402 | 355402 |
| chr_4 | g14410 | g14410.t10 | isoform | g14410.t10 | 356223 | 356959 |
| chr_4 | g14410 | g14410.t10 | exon | g14410.t10.exon1 | 356223 | 356471 |
| chr_4 | g14410 | g14410.t10 | cds | g14410.t10.CDS1 | 356224 | 356471 |
| chr_4 | g14410 | g14410.t10 | exon | g14410.t10.exon2 | 356526 | 356811 |
| chr_4 | g14410 | g14410.t10 | cds | g14410.t10.CDS2 | 356526 | 356760 |
| chr_4 | g14410 | g14410.t10 | exon | g14410.t10.exon3 | 356929 | 356959 |
| chr_4 | g14410 | g14410.t10 | TSS | g14410.t10 | 357084 | 357084 |
Sequences
>g14410.t10 Gene=g14410 Length=566
ATGTTTACTATTAGACAATCATTCAAATTTGATCAATGCTCGTTCAATTGTGTCCCTCTC
GCATCTTCCTGAGACTCATCAAATGTTGTATAAGACATGTCGTGATTTTGCTGATAATGA
GTTAGCACCAATTGCTAAACAAATTGATAAAGAACATCGATATCCATCGGAGCAAGTTAA
GAAAATGGGTGAACTTGGTTTACTTGCGATTGCTATTCCTGAAAAATATGGAGGAACAGG
GCTTGATTATCTTGCTTATGCTATTGGCATGGAAGAAATTTCTCGAGGTTGTGCTACTTG
TGGTGTCATTATGACTGTCAACAACACTTTATATTTGGGACCAGTTAAAAATTTTGGTAA
CGAAGCTCAAAAAAAAGAATTTTTAACTCCTTACACTGATGGTGACAAGATTGGATGTTT
TGCATTATCTGAGCCTGGAAATGGAAGTGATGCTGCAGCTGCTTCTACTACAGCAAAACT
TGTTGGTGATAAATGGGTTTTAAATGGTACCAAAAATTGGATAACAAATGGTCCTGATGC
TTCAGCTGCAATTGTTTTTGCTACCA
>g14410.t10 Gene=g14410 Length=161
MLYKTCRDFADNELAPIAKQIDKEHRYPSEQVKKMGELGLLAIAIPEKYGGTGLDYLAYA
IGMEEISRGCATCGVIMTVNNTLYLGPVKNFGNEAQKKEFLTPYTDGDKIGCFALSEPGN
GSDAAAASTTAKLVGDKWVLNGTKNWITNGPDASAAIVFAT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14410.t10 | Gene3D | G3DSA:1.10.540.10 | - | 1 | 110 | 1.9E-38 |
| 8 | g14410.t10 | Gene3D | G3DSA:2.40.110.10 | - | 111 | 161 | 5.2E-18 |
| 3 | g14410.t10 | PANTHER | PTHR43884:SF12 | ISOVALERYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED | 1 | 161 | 1.1E-57 |
| 4 | g14410.t10 | PANTHER | PTHR43884 | ACYL-COA DEHYDROGENASE | 1 | 161 | 1.1E-57 |
| 2 | g14410.t10 | Pfam | PF02771 | Acyl-CoA dehydrogenase, N-terminal domain | 1 | 108 | 3.1E-32 |
| 1 | g14410.t10 | Pfam | PF02770 | Acyl-CoA dehydrogenase, middle domain | 112 | 160 | 1.6E-14 |
| 6 | g14410.t10 | ProSitePatterns | PS00072 | Acyl-CoA dehydrogenases signature 1. | 114 | 126 | - |
| 5 | g14410.t10 | SUPERFAMILY | SSF56645 | Acyl-CoA dehydrogenase NM domain-like | 1 | 160 | 4.45E-55 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | MF |
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0003995 | acyl-CoA dehydrogenase activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
