General information for g14410.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Short-chain specific acyl-CoA dehydrogenase, mitochondrial.
Parent gene
- The parent gene g14410 is located on chr_4: 356223..357445 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14410 | g14410.t2 | TTS | g14410.t2 | 355402 | 355402 |
| chr_4 | g14410 | g14410.t2 | isoform | g14410.t2 | 355467 | 356959 |
| chr_4 | g14410 | g14410.t2 | exon | g14410.t2.exon1 | 355467 | 355528 |
| chr_4 | g14410 | g14410.t2 | cds | g14410.t2.CDS1 | 355467 | 355528 |
| chr_4 | g14410 | g14410.t2 | exon | g14410.t2.exon2 | 355589 | 355679 |
| chr_4 | g14410 | g14410.t2 | cds | g14410.t2.CDS2 | 355589 | 355679 |
| chr_4 | g14410 | g14410.t2 | exon | g14410.t2.exon3 | 355738 | 356959 |
| chr_4 | g14410 | g14410.t2 | cds | g14410.t2.CDS3 | 355738 | 356031 |
| chr_4 | g14410 | g14410.t2 | TSS | g14410.t2 | 357084 | 357084 |
Sequences
>g14410.t2 Gene=g14410 Length=1375
ATGTTTACTATTAGACAATCATTCAAATTTGGTAAATTAAATAAAGAAATTCATAATTGA
ACTTTGGACCTTTTAACTAATTTTTGATATTAAAATTATAAATTCAAATAAATGACCTCA
AAATAATTTATTTCCTTCAGCTTCATCAATCAATGCTCGTTCAATTGTGTCCCTCTCGCA
TCTTCCTGAGACTCATCAAATGTTGTATAAGACATGTCGTGATTTTGCTGATAATGAGTT
AGCACCAATTGCTAAACAAATTGATAAAGAACATCGATATCCATCGGAGCAAGTTAAGAA
AATGGGTGAACTTGGTTTACTTGCGATTGCTATTCCTGAAAAATATGGAGGAACAGGGCT
TGATTATCTTGCTTATGCTATTGGCATGGAAGAAATTTCTCGAGGTTGTGCTACTTGTGG
TGTCATTATGACTGGTAAATATTATTTTTTTTTTTAAACCTTTCCAAAATTAATCAAAAA
GTTTTTAGTCAACAACACTTTATATTTGGGACCAGTTAAAAATTTTGGTAACGAAGCTCA
AAAAAAAGAATTTTTAACTCCTTACACTGATGGTGACAAGATTGGATGTTTTGCATTATC
TGAGCCTGGAAATGGAAGTGATGCTGCAGCTGCTTCTACTACAGCAAAACTTGTTGGTGA
TAAATGGGTTTTAAATGGTACCAAAAATTGGATAACAAATGGTCCTGATGCTTCAGCTGC
AATTGTTTTTGCTACCACTGATAAAAAATTAAAACACAAAGGTATTTCAGCTTTTATTGT
AGAGCGTGGTATACCAGGATTTAGTTATGGCAAGAAAGAAGATAAATTGGGTATAAGAGG
TAGTTCAACATGCTCTTTGATTTTTGATGACTGTGCTATACCTAAAGAAAATATTCTCGG
TGAAGAAGGATTTGGATTTAAAATTGCAATGAAAACATTAGATGAGGGCCGAATTGGAAT
AGCAGGGCAAGCATTAGGCATTGCTCAAGCATCATTAGAATGTGCAGTTGATTATGCAAA
TAAGAGAATCGCATTTGGAAATCCTATAAGCAAAATGCAAACAATACAAAATAAAATAGC
CGATATGGCAATGAGAATTGAAGCAGCAAGATTACTAACCTGGAGAGCTGCTGTGTTGAA
AGATGAAGGTAAATCAATAACAAAAGAAGCTGCTATGGCAAAATTAGCTGCTAGTGAAAC
TGCAACTTTCTGTTCCCATCAAGCAATACAAATTCTTGGTGGTATGGGATACGTAACAGA
TATGCCAGCAGAACGTCATTATAGAGATGCAAGAATAACTGAAATTTATGAAGGAACATC
CGAAATTCAAAGACTTGTAATTGCTGGTCAAATACTTAAACAAATGTCACAATAA
>g14410.t2 Gene=g14410 Length=148
MKTLDEGRIGIAGQALGIAQASLECAVDYANKRIAFGNPISKMQTIQNKIADMAMRIEAA
RLLTWRAAVLKDEGKSITKEAAMAKLAASETATFCSHQAIQILGGMGYVTDMPAERHYRD
ARITEIYEGTSEIQRLVIAGQILKQMSQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g14410.t2 | Gene3D | G3DSA:1.20.140.10 | - | 1 | 148 | 3.4E-55 |
| 2 | g14410.t2 | PANTHER | PTHR43884:SF26 | MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-LIKE PROTEIN-RELATED | 1 | 146 | 2.7E-59 |
| 3 | g14410.t2 | PANTHER | PTHR43884 | ACYL-COA DEHYDROGENASE | 1 | 146 | 2.7E-59 |
| 1 | g14410.t2 | Pfam | PF00441 | Acyl-CoA dehydrogenase, C-terminal domain | 1 | 142 | 7.2E-48 |
| 5 | g14410.t2 | ProSitePatterns | PS00073 | Acyl-CoA dehydrogenases signature 2. | 101 | 120 | - |
| 4 | g14410.t2 | SUPERFAMILY | SSF47203 | Acyl-CoA dehydrogenase C-terminal domain-like | 1 | 145 | 1.21E-56 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | MF |
| GO:0003995 | acyl-CoA dehydrogenase activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
