General information for g14412.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative glycerol kinase 5.
Parent gene
- The parent gene g14412 is located on chr_4: 363245..370777 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14412 | g14412.t2 | TSS | g14412.t2 | 362876 | 362876 |
| chr_4 | g14412 | g14412.t2 | isoform | g14412.t2 | 362879 | 364880 |
| chr_4 | g14412 | g14412.t2 | exon | g14412.t2.exon1 | 362879 | 362947 |
| chr_4 | g14412 | g14412.t2 | exon | g14412.t2.exon2 | 363012 | 363513 |
| chr_4 | g14412 | g14412.t2 | cds | g14412.t2.CDS1 | 363245 | 363513 |
| chr_4 | g14412 | g14412.t2 | exon | g14412.t2.exon3 | 363588 | 364880 |
| chr_4 | g14412 | g14412.t2 | cds | g14412.t2.CDS2 | 363588 | 364878 |
| chr_4 | g14412 | g14412.t2 | TTS | g14412.t2 | 364999 | 364999 |
Sequences
>g14412.t2 Gene=g14412 Length=1864
TTTGTGAGTGAACTTTGAATCCGTCGGTTTGAAACGGAGAAATCTCTCATATTTTAATAA
TTTATTTAATTTTCTTTTACTATTGACCAATACATCAATTTAAAAAGCTAAAAATATTTA
GAAATCTTATTTTAAAACAATTACATTGTGAGCATTTTCTTAATCAATTATTAAAATTTC
AAATTGAAGAAAGACAATTGTGAAAGAGTATTGATTAAAAAACTTTTAAAAAATTTATTT
GTCAAGAGTTTAAAAATTATTTTTGTCAATAAGCTGAGGCGAATAAAACAAATTATAAAA
AAATGTCAGATATGTCTCAACAAACAGATTTGCCAATCACTGCTGTTTTAGATGTTGGTA
CCACATCTGTTCGATGCTTTGTTTATTCGTCAAATTTCAAAATATTGTCAACTGCATCAA
AAGATATTGAAATTTTAATTCCCCAGCATGGTTATAATGAAATTGATCCTGAAAAATTGT
ACTGTGATTGTGTTTATGTAATTAAAAAAGCTGTGAGAGACGCAAATTGTTCATTTGCTG
AAATTGTTCTTGGAATTTCAACTTTGAGATCTTCATTTACAACATGGAACAAAACAACTG
GAAAAACCTATCATAGAATTTGTACATGGAATGATATAAGAGCGGATGATCTTGTACGAA
AATGGAATAAATCTTTCACATTTTATGGGCTTCATTTAGGTGCAGGATTTCTCTATTTTT
TTACACGTTCTCAAAAGTTCCTTGCTGGATCAGTGCTGAAACTGACAAATACTCAAGTCA
CACCACGATTATTATGGTGCTTAGAAAACATTCCAGAGTTGAAAGAAGGCATAAAATTAG
GCGAGGCAGTGTTTGGAACAATTGAATCATTTCTTCTTTATAGACTGAAAAAAGGAAACA
CTTTGACACAAGTTGAACATGTTTCAGATATGACTAATGCCATTGCTACAGGTCTTTATG
ATCCATTTACACTTTCTTGGGGTGATTGGGCTTTTAAAATGTTCAAAATTAATAGAAACA
TTATGCCAAAGGTGGTTGATAATTCATACAACTTTGGCTCAACGCATTCATCGGTTTTTG
GTGTTCCTGTAAAAATATCTGCTGTAATAGCTGATCAAGCAGCTTCAATATTTGGTAATT
GTGTCTTTAGCAAAGGAAATGCCAAATTGACACTTGGAACTGGAACTTTTCTAAGTATAA
ACACAGCAAATAAGTGTCATGCAAGTATCTGTGGTTTATATCCACAAATTGCTTACAGCC
TTCATGAAACAGGCGTTATTTTTGATGTAGAAGGCAACAGCAATGATACAGCAATGAGTA
TACTTTGGGGAATGCAAATTGGTCTTTATAATGATCCTTCAGAAACTTCAGATATGGCTG
AAAGTGTTTGTGATTCTGATGGTGTATATTTTATACCAGCATTTAATGGTCTTTCTGCAC
CAATAAATGATTTTAATGCATCAACTGGATTTATAGGAATTAAACCATCAACAACAAAAT
ATCATATGGTTCGTGCAATTTTACAATCTATTGTATTCCGTGTGGCACAATTAATAAGAG
CTGCAAGTAAAGAGACTAATTATGTTATTAGACAAGTTAAAGCTGATGGGGGTGTTTCAA
AAAATGATTTTGTGCTACAATCTTTAGCTGATTTATGTGATTTATCTGTTGCGAGAAGTA
ATGCTGAAAGTACAAGTCTTGGTGTAGCTTATCTAAGCTGTATAAACATGAGAGCAATGA
AAATTGATGATGTGAAGAAACAATATAAACCATTAAAAGTATTCTTACCAAAGACTAAAA
ATAAAGAAGATATTATTAGAGATTTTTGTGAATGGGAAAGAGCTGTTGAAAGATTTAAAA
GTTG
>g14412.t2 Gene=g14412 Length=520
MSDMSQQTDLPITAVLDVGTTSVRCFVYSSNFKILSTASKDIEILIPQHGYNEIDPEKLY
CDCVYVIKKAVRDANCSFAEIVLGISTLRSSFTTWNKTTGKTYHRICTWNDIRADDLVRK
WNKSFTFYGLHLGAGFLYFFTRSQKFLAGSVLKLTNTQVTPRLLWCLENIPELKEGIKLG
EAVFGTIESFLLYRLKKGNTLTQVEHVSDMTNAIATGLYDPFTLSWGDWAFKMFKINRNI
MPKVVDNSYNFGSTHSSVFGVPVKISAVIADQAASIFGNCVFSKGNAKLTLGTGTFLSIN
TANKCHASICGLYPQIAYSLHETGVIFDVEGNSNDTAMSILWGMQIGLYNDPSETSDMAE
SVCDSDGVYFIPAFNGLSAPINDFNASTGFIGIKPSTTKYHMVRAILQSIVFRVAQLIRA
ASKETNYVIRQVKADGGVSKNDFVLQSLADLCDLSVARSNAESTSLGVAYLSCINMRAMK
IDDVKKQYKPLKVFLPKTKNKEDIIRDFCEWERAVERFKS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14412.t2 | Gene3D | G3DSA:3.30.420.40 | - | 11 | 279 | 0 |
| 8 | g14412.t2 | Gene3D | G3DSA:3.30.420.40 | - | 280 | 519 | 0 |
| 3 | g14412.t2 | PANTHER | PTHR10196 | SUGAR KINASE | 12 | 519 | 0 |
| 4 | g14412.t2 | PANTHER | PTHR10196:SF68 | GLYCEROL KINASE 5-RELATED | 12 | 519 | 0 |
| 9 | g14412.t2 | PIRSF | PIRSF000538 | GlpK | 12 | 520 | 0 |
| 2 | g14412.t2 | Pfam | PF00370 | FGGY family of carbohydrate kinases, N-terminal domain | 14 | 278 | 0 |
| 1 | g14412.t2 | Pfam | PF02782 | FGGY family of carbohydrate kinases, C-terminal domain | 287 | 474 | 0 |
| 5 | g14412.t2 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 15 | 280 | 0 |
| 6 | g14412.t2 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 281 | 518 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K19583 (putative glycerol kinase 5)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
