General information for g14412.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Putative glycerol kinase 5.
Parent gene
- The parent gene g14412 is located on chr_4: 363245..370777 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14412 | g14412.t3 | TSS | g14412.t3 | 362876 | 362876 |
| chr_4 | g14412 | g14412.t3 | isoform | g14412.t3 | 363245 | 363823 |
| chr_4 | g14412 | g14412.t3 | exon | g14412.t3.exon1 | 363245 | 363513 |
| chr_4 | g14412 | g14412.t3 | cds | g14412.t3.CDS1 | 363245 | 363513 |
| chr_4 | g14412 | g14412.t3 | exon | g14412.t3.exon2 | 363588 | 363823 |
| chr_4 | g14412 | g14412.t3 | cds | g14412.t3.CDS2 | 363588 | 363822 |
| chr_4 | g14412 | g14412.t3 | TTS | g14412.t3 | NA | NA |
Sequences
>g14412.t3 Gene=g14412 Length=505
ATGTCAGATATGTCTCAACAAACAGATTTGCCAATCACTGCTGTTTTAGATGTTGGTACC
ACATCTGTTCGATGCTTTGTTTATTCGTCAAATTTCAAAATATTGTCAACTGCATCAAAA
GATATTGAAATTTTAATTCCCCAGCATGGTTATAATGAAATTGATCCTGAAAAATTGTAC
TGTGATTGTGTTTATGTAATTAAAAAAGCTGTGAGAGACGCAAATTGTTCATTTGCTGAA
ATTGTTCTTGGAATTTCAACTTTGAGATCTTCATTTACAACATGGAACAAAACAACTGGA
AAAACCTATCATAGAATTTGTACATGGAATGATATAAGAGCGGATGATCTTGTACGAAAA
TGGAATAAATCTTTCACATTTTATGGGCTTCATTTAGGTGCAGGATTTCTCTATTTTTTT
ACACGTTCTCAAAAGTTCCTTGCTGGATCAGTGCTGAAACTGACAAATACTCAAGTCACA
CCACGATTATTATGGTGCTTAGAAA
>g14412.t3 Gene=g14412 Length=168
MSDMSQQTDLPITAVLDVGTTSVRCFVYSSNFKILSTASKDIEILIPQHGYNEIDPEKLY
CDCVYVIKKAVRDANCSFAEIVLGISTLRSSFTTWNKTTGKTYHRICTWNDIRADDLVRK
WNKSFTFYGLHLGAGFLYFFTRSQKFLAGSVLKLTNTQVTPRLLWCLE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14412.t3 | Gene3D | G3DSA:3.30.420.40 | - | 11 | 168 | 0 |
| 2 | g14412.t3 | PANTHER | PTHR10196 | SUGAR KINASE | 12 | 168 | 0 |
| 3 | g14412.t3 | PANTHER | PTHR10196:SF68 | GLYCEROL KINASE 5-RELATED | 12 | 168 | 0 |
| 1 | g14412.t3 | Pfam | PF00370 | FGGY family of carbohydrate kinases, N-terminal domain | 14 | 124 | 0 |
| 4 | g14412.t3 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 15 | 156 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
