General information for g14416.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein artichoke.
Parent gene
- The parent gene g14416 is located on chr_4: 403350..404025 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14416 | g14416.t1 | TSS | g14416.t1 | 398096 | 398096 |
| chr_4 | g14416 | g14416.t1 | isoform | g14416.t1 | 398144 | 404025 |
| chr_4 | g14416 | g14416.t1 | exon | g14416.t1.exon1 | 398144 | 398327 |
| chr_4 | g14416 | g14416.t1 | cds | g14416.t1.CDS1 | 398144 | 398327 |
| chr_4 | g14416 | g14416.t1 | exon | g14416.t1.exon2 | 398381 | 398661 |
| chr_4 | g14416 | g14416.t1 | cds | g14416.t1.CDS2 | 398381 | 398661 |
| chr_4 | g14416 | g14416.t1 | exon | g14416.t1.exon3 | 398730 | 399102 |
| chr_4 | g14416 | g14416.t1 | cds | g14416.t1.CDS3 | 398730 | 399102 |
| chr_4 | g14416 | g14416.t1 | exon | g14416.t1.exon4 | 399161 | 400015 |
| chr_4 | g14416 | g14416.t1 | cds | g14416.t1.CDS4 | 399161 | 400015 |
| chr_4 | g14416 | g14416.t1 | exon | g14416.t1.exon5 | 400068 | 400783 |
| chr_4 | g14416 | g14416.t1 | cds | g14416.t1.CDS5 | 400068 | 400783 |
| chr_4 | g14416 | g14416.t1 | exon | g14416.t1.exon6 | 400847 | 401394 |
| chr_4 | g14416 | g14416.t1 | cds | g14416.t1.CDS6 | 400847 | 401394 |
| chr_4 | g14416 | g14416.t1 | exon | g14416.t1.exon7 | 401483 | 401995 |
| chr_4 | g14416 | g14416.t1 | cds | g14416.t1.CDS7 | 401483 | 401995 |
| chr_4 | g14416 | g14416.t1 | exon | g14416.t1.exon8 | 402055 | 402521 |
| chr_4 | g14416 | g14416.t1 | cds | g14416.t1.CDS8 | 402055 | 402521 |
| chr_4 | g14416 | g14416.t1 | exon | g14416.t1.exon9 | 402580 | 403329 |
| chr_4 | g14416 | g14416.t1 | cds | g14416.t1.CDS9 | 402580 | 403329 |
| chr_4 | g14416 | g14416.t1 | exon | g14416.t1.exon10 | 403391 | 404025 |
| chr_4 | g14416 | g14416.t1 | cds | g14416.t1.CDS10 | 403391 | 404025 |
| chr_4 | g14416 | g14416.t1 | TTS | g14416.t1 | NA | NA |
Sequences
>g14416.t1 Gene=g14416 Length=5322
ATGGAACTAAAAATTGTAATTTTTCTATTTTATTTAACTCTAATTGGTGCTAACCCAATA
ATTTTGAAAAATGAATTTGAGAGTTTAAAATTTTTCGACGATCCCGATGTTATTTCGTGC
AACTTTGAAGCACCACAAGCACCGCAAGGTTATACCTGTCATTTGATCATACAAAATCCA
TTAGGTCGAAACAATTTTACGGAAATTGCTGGAATTCATTTATTTAATTTTACAAATAAT
GATGTTGAACAAGTTTTTGGAATTTATCAAAATTCTCTTAATATACCGTCAATAATTTGT
CAATCATTTCCAAATACTCTTGACTTTATAATTGAAATGAGCAATATTGAAGTGATTGAT
GCAGACACTTTTGTTGATTGTACTGTTCTTGAGTTTATCATGATTGGTATTAATCGAATC
GTGTCGATTCCAGATGGACTTTTTAGAAATAATGTAAATTTACAGGTAATTCTGCTAAAT
GATAATCGTATAAATCAAATTGCTTCAAATGCTTTCGCTGGCACTAGAGCAACTTATATT
GACTTAAGTTACAATCAGTTAGGAGTTTATAATCCCTCTTGGGCGACAGCTGTTAATGAA
ACTCTAGAAATTCTTCTTATAAACCGTAATCAATTTTATTATTTGCCACTTCTTCCATTT
AGCGATCTCGGCAATCTTCGTGAGCTAGATTTATCACGCAATCCTTTTACATCAATTAAT
GATTACAGTTTTCTTGGCTTGCACAATTTACGTCGACTTTATTTGAATGATCTTGGTTTA
ACTGCTGTAATTCGCAATTGGTTCATTGATTTACCATCATTAACTCATCTTTTCTTAGGC
TATAATAGAATTCGTGAAATAAATACAAATGACTTTAACAACCTCACACAAATAACAGAA
ATTAATCTTAATAATAATGAACTTACATTCATTAATGCAAACGGTTTTGGTCAATCACTT
TCAACACTTACAAATCTTCATTTGACTAATAATCGAATCATTGCCATAGATGAAGATTTC
TTTGATCAAAGTCAGAACTTAAGATGGCTGTTGTTAAATAATAACACTTGTTTTAGTCAA
AATATCTATGATGTGAGTGGAGAAAGAAATGAAATACGAGAACAATTATCAGAATGCTTT
AGTAATTTTATCGGATCAGCAAGATGCAGTATGTTTGACATGCAGCCTTATCCTTATGAA
TGTGTTTTATCAATAATGAATCCTATTGGTAGAGATTTCGATTCAATTATAGTAGAACAT
AGTGAAGGTCGAACTGATGAAGATGTAATAGTTGTTGAAGCGCTTTTTCAACATTCAAGA
AATTTTCCATCGGTCATTTGTAGACAATTTATTAATGTGGATTATATTTTGATTGAAGAA
AGTGAAATTGAATTCATTGATGAAAATTCATTTGTTGATTGTATAAATTTGTGGCAATTG
ACATTAGGCTACAATAGAATTACAAACATTCCTGATGGTACATTCCGAAATAATCCAAAT
TTAGAAATATTTGAAGGATTTAGGAACCAAATTTCAAGACTCGGAACCACAGCGCTTACT
GGCAGCGGACTTAGAACTTTAGCTCTTGATTCAAATTCAATTGACAGCTTCAATTTAGAG
ACATTTTTGCCAATTGCTGAAACATTACAAAATCTTATGCTAGCTGATAATAGAATTAAT
CAAATTCCGTCAGGTGGATTTTCACGTCTCACTCAGTTGCGTTGGATAGATCTTAGTGGA
AACAAAATTCAAACAATTCCAAGTAATGCTTTTCAATTCCTCTGGAATCTTCAGCATCTT
GAACTTATGGATCTTGGATTAACTGTGATTGAGCCAGATTGGTTCACTGATCTTCAAGCT
TTATTTGATTTACGGCTCGATGGAAATAATTTTAATTCAATACCTTCAAATTCTTTCAAT
AATCTTCGTTCACTTACAACAATTACACTTGCTAATAATCAAATCAGAAATCTTCATGCA
AATTCTTTTGGAAATTCGCTCAACACGCTTGTATATTTACTTGCAACTAACAATAATGTT
CGATCACTTGATCCTTTAATTATTGATAATGCACCATCACTTCAATGGTTACATCTTAAC
AACAACTTTTGCGCAAATTTAAACTTTTACAATATTCAATCAGACTTAAGTTCTGTTCGT
GAACAATTATCTGAATGTTTCAGGATGTTTACAGGATTTATGTCATGCACGTATTATGAT
TTTTTTGCTTACCTTTGTCGCCTTAATATTCAAAATGTTCAACCTCGAAATGATTGGACT
GAAGTACCTGGTACACATGTTGATAATCGTTCAAATGAAGATGTTCGAATTGTTGAAGTT
TATATGCAAGACACAGCAAATATTCCGACTATTTTGTGTTCACAATTTCCCCAATTAACC
GAGATACAGGTTCAAAGAAGTTTTCTTCAAGCTATTGATGAAGAAATGTTTGAAGATTGC
ACAAATTTAGAATCTGTAGTTTTTAGTTTCAATAATCTTCGAGAAATACAAGACTTTACC
TTTGTAAATAGTCCAAGATTGGAATCTATTGAAATTAATTCAAATCGTCTCAGAACAATT
GCTCCAAATTCATTTTTCAACTTAAGACTTTCTTTCCTAGAGCTGGATCACAATGAGTTA
ACAGAATTTAATCCTCAATGGCTGGCTTCTTCTCATGAAACACTTATGTTTCTTTATATC
TCATTCAATCAAATTCAAGACCTTCCCGAAAATTCCTTTAGTGGATTGCAAAATGTAATA
ATTTTGGATATGGGTGAAAATCCTTATAGAAGTATTCCACCAACAGTTTTTGATGGTTTA
GAAAATTTAATGGAGTTATGGATTGATCGATGTGGAATAGTGAATGTTGATGAACGATGG
TTCTTGAACTTGAAAGAATTGAGATTTGTATCACTTTACGATAATCAAATAACCACTTTG
CGATCAGGAATTTTTGACAATCTACCAAAGCTGTATGAATTGGATTTAGGAAATAATCGT
ATCACTATGCTACATTCTGATACATTTGGTTCAACTGCTCCAAATTTGATGTATGTTTTT
GTTGATTTTAATTCGATCAATGCTATTGATCAAGAATTTTTCGAAGCTGCCAATCAACTT
GTATATTTATTCGTCAGAGGAAATTTGTGCATTGATAGAGATTTTTACAATGTAAATGTA
AATAGAAATGAAGTTTCTAACGAATTAAGCAGATGCTTCAATAATTTTGCTGCACCAGGT
TCTATTTCATGTTACTATGAAGAATATCCTAATCCTGGCGATTATGGATGTATCTTGACT
ACAGTAAATCCCAACGGACATGAATTTGATTCTATTTCTGGTAATCACAAAACTGGATTT
GGTAATGAAGATGTTCAAAAAGTAGCAAGTGGTTATCAAAATAGTCGAATCTTACCATCA
ATTTTATGTGATTTATTTAATAATTTGGGAGAAATTCAATTTCGTACAAGCCAAATTCAA
AGAATACCTGAAAATTCACTTCAAAATTGTGTAAATCTATGGAGATTATCTCTTGATAAT
AATTTGATAACAAGTTTAAGCAGCACTGTTTTTAGAAACTTAGCAAATTTACAATTTATT
GAGTTACAAGTCAATCATATTCATACACTCGCACCGGGTTCTTTCGCTAATACAGCTATT
GAAATCTTATCTTTAGGATCAAATAGATTAAGAGAAATGACAAATGATAATTGGCAAGGA
ATTGAAACAACTTTAAAAGAACTCTACTTATTCCAAAACAATTTGAGAAACGTGCAAGAA
AACCTTTTCGGTAGACTTCAAAATTTAGAATATCTAGATTTAGGTCTTAATTCTGGCGTG
GAAATTGAACAAAGAGCTTTTTCATCCCTTGGAAATCTTCAAACTTTGTTAATTGATAAT
TCAAGGTTAGGAAGAATTGATCCAGAATGGTTCCAAGGTCTTCAAAATCTTAATGCAATA
TTTATACATAAAAATGATATTCATTCACTACAACCTGGTGTTTTTGCTTCATTAACACGA
CTTACTGAAATCACAATGGGTGGAAATCCATTTGAAAGCCTCAATTCTGATATTTTTGGA
AACAATCTAGCAAATATTCAGAGAATAAATGCTGTCAATAGTCAAATAAATGCAATTGAT
GAAAGAATTTTCGATATTGCTGGAAATAGTTTGGAGATTCTTTATCTTTATGATAACGAA
TGTTCTCGTCAAAATTTCTATAATGTTTCAAACAATCTAAATGAAGTTCAAAGTAGTCTT
GAGGAATGTTTTACTAATTTCCGTGGAAATATTCAATGTCATTATGTGATGTATGCAGGA
CAGTATACTTGTATTTTATTAATTCAAAATATCGCTGGTCACGATCAATTTACTGAAATT
CAAGGTGATCATGATGGAGCAACTGATGCTGATGTTCTATTAGTAGAATCACTTGTACAA
AATACTCGGAATATTCCACAAATTTTATGTCGGCAATTTTTGAATCTTGAAGAAATTTTC
ATTGAAGAATCGAGAATTCAAAGAATTACAATTGACGAATGCAAAAATCTTCAAAGACTT
ACGTTGGCTTATAATGAAATTGAAGCAATCGAAGCTGGAACTTTTGCAAATAATGAACAT
TTATTTTATATAGATCTACGTTTGAATAGATTAACTAGAATTGCTGATGATGTATTTGCT
GGAACAGTTTTGCAAAATTTGGATCTTTCTTCAAATCAGTTAGCATCTTTTAATCCTGCT
TGGCTATCTTCAATTCTTAATACACTACAAAAACTAGAACTTTATGAGAATTCAATAATT
TCAATTGATCAAAATGCTTTTACAACCCTTACAAATCTTAGAACACTTGATCTTGGTCTT
AATCCACATATTATTTTACCACCAAATATTTTTAAACCATTAGTAAATCTTGATAAATTA
TTTATTGACAGCAGTGGTTTAAGAAGAATTGATTCACAATGGTTTTCAACTCTCACCTTA
CTAACTGAGCTTCATTTGCATTCAAATAGTATTCGTTCAATGCCAGAAAATGTGTTTACT
CCTCTAGTTAATCTCGGTTACTTATCAGTAAGGGATAATCTGATACGAGTCATCAATGGG
AATGCATTTAGCACTCAGATGAATAATTTTACACGTTTCTATGCTCAGAGTAATAGAATC
AATGGATTTGATGATCAATTTTTCGAGAGTATCAGTGGACAACTTGAGTTTTTGTATTTG
TATGATAATGTTTGTATTTCAATGAATTTCTATGAAGTTAATCAAAATCAAAACATTGTT
AGAGAAGAATTGCAAAGATGTTTTGATAATTTTGAAAATTAA
>g14416.t1 Gene=g14416 Length=1773
MELKIVIFLFYLTLIGANPIILKNEFESLKFFDDPDVISCNFEAPQAPQGYTCHLIIQNP
LGRNNFTEIAGIHLFNFTNNDVEQVFGIYQNSLNIPSIICQSFPNTLDFIIEMSNIEVID
ADTFVDCTVLEFIMIGINRIVSIPDGLFRNNVNLQVILLNDNRINQIASNAFAGTRATYI
DLSYNQLGVYNPSWATAVNETLEILLINRNQFYYLPLLPFSDLGNLRELDLSRNPFTSIN
DYSFLGLHNLRRLYLNDLGLTAVIRNWFIDLPSLTHLFLGYNRIREINTNDFNNLTQITE
INLNNNELTFINANGFGQSLSTLTNLHLTNNRIIAIDEDFFDQSQNLRWLLLNNNTCFSQ
NIYDVSGERNEIREQLSECFSNFIGSARCSMFDMQPYPYECVLSIMNPIGRDFDSIIVEH
SEGRTDEDVIVVEALFQHSRNFPSVICRQFINVDYILIEESEIEFIDENSFVDCINLWQL
TLGYNRITNIPDGTFRNNPNLEIFEGFRNQISRLGTTALTGSGLRTLALDSNSIDSFNLE
TFLPIAETLQNLMLADNRINQIPSGGFSRLTQLRWIDLSGNKIQTIPSNAFQFLWNLQHL
ELMDLGLTVIEPDWFTDLQALFDLRLDGNNFNSIPSNSFNNLRSLTTITLANNQIRNLHA
NSFGNSLNTLVYLLATNNNVRSLDPLIIDNAPSLQWLHLNNNFCANLNFYNIQSDLSSVR
EQLSECFRMFTGFMSCTYYDFFAYLCRLNIQNVQPRNDWTEVPGTHVDNRSNEDVRIVEV
YMQDTANIPTILCSQFPQLTEIQVQRSFLQAIDEEMFEDCTNLESVVFSFNNLREIQDFT
FVNSPRLESIEINSNRLRTIAPNSFFNLRLSFLELDHNELTEFNPQWLASSHETLMFLYI
SFNQIQDLPENSFSGLQNVIILDMGENPYRSIPPTVFDGLENLMELWIDRCGIVNVDERW
FLNLKELRFVSLYDNQITTLRSGIFDNLPKLYELDLGNNRITMLHSDTFGSTAPNLMYVF
VDFNSINAIDQEFFEAANQLVYLFVRGNLCIDRDFYNVNVNRNEVSNELSRCFNNFAAPG
SISCYYEEYPNPGDYGCILTTVNPNGHEFDSISGNHKTGFGNEDVQKVASGYQNSRILPS
ILCDLFNNLGEIQFRTSQIQRIPENSLQNCVNLWRLSLDNNLITSLSSTVFRNLANLQFI
ELQVNHIHTLAPGSFANTAIEILSLGSNRLREMTNDNWQGIETTLKELYLFQNNLRNVQE
NLFGRLQNLEYLDLGLNSGVEIEQRAFSSLGNLQTLLIDNSRLGRIDPEWFQGLQNLNAI
FIHKNDIHSLQPGVFASLTRLTEITMGGNPFESLNSDIFGNNLANIQRINAVNSQINAID
ERIFDIAGNSLEILYLYDNECSRQNFYNVSNNLNEVQSSLEECFTNFRGNIQCHYVMYAG
QYTCILLIQNIAGHDQFTEIQGDHDGATDADVLLVESLVQNTRNIPQILCRQFLNLEEIF
IEESRIQRITIDECKNLQRLTLAYNEIEAIEAGTFANNEHLFYIDLRLNRLTRIADDVFA
GTVLQNLDLSSNQLASFNPAWLSSILNTLQKLELYENSIISIDQNAFTTLTNLRTLDLGL
NPHIILPPNIFKPLVNLDKLFIDSSGLRRIDSQWFSTLTLLTELHLHSNSIRSMPENVFT
PLVNLGYLSVRDNLIRVINGNAFSTQMNNFTRFYAQSNRINGFDDQFFESISGQLEFLYL
YDNVCISMNFYEVNQNQNIVREELQRCFDNFEN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 37 | g14416.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 46 | 374 | 1.3E-45 |
| 41 | g14416.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 428 | 724 | 5.1E-47 |
| 40 | g14416.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 739 | 1071 | 4.0E-55 |
| 38 | g14416.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1124 | 1441 | 2.2E-45 |
| 39 | g14416.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1449 | 1766 | 2.2E-45 |
| 15 | g14416.t1 | PANTHER | PTHR45617:SF42 | LEUCINE RICH REPEAT CONTAINING G PROTEIN-COUPLED RECEPTOR 6 | 110 | 263 | 6.0E-217 |
| 25 | g14416.t1 | PANTHER | PTHR45617 | - | 110 | 263 | 6.0E-217 |
| 16 | g14416.t1 | PANTHER | PTHR45617:SF42 | LEUCINE RICH REPEAT CONTAINING G PROTEIN-COUPLED RECEPTOR 6 | 244 | 355 | 6.0E-217 |
| 26 | g14416.t1 | PANTHER | PTHR45617 | - | 244 | 355 | 6.0E-217 |
| 20 | g14416.t1 | PANTHER | PTHR45617:SF42 | LEUCINE RICH REPEAT CONTAINING G PROTEIN-COUPLED RECEPTOR 6 | 441 | 603 | 6.0E-217 |
| 30 | g14416.t1 | PANTHER | PTHR45617 | - | 441 | 603 | 6.0E-217 |
| 14 | g14416.t1 | PANTHER | PTHR45617:SF42 | LEUCINE RICH REPEAT CONTAINING G PROTEIN-COUPLED RECEPTOR 6 | 509 | 724 | 6.0E-217 |
| 24 | g14416.t1 | PANTHER | PTHR45617 | - | 509 | 724 | 6.0E-217 |
| 18 | g14416.t1 | PANTHER | PTHR45617:SF42 | LEUCINE RICH REPEAT CONTAINING G PROTEIN-COUPLED RECEPTOR 6 | 601 | 860 | 6.0E-217 |
| 28 | g14416.t1 | PANTHER | PTHR45617 | - | 601 | 860 | 6.0E-217 |
| 13 | g14416.t1 | PANTHER | PTHR45617:SF42 | LEUCINE RICH REPEAT CONTAINING G PROTEIN-COUPLED RECEPTOR 6 | 779 | 985 | 6.0E-217 |
| 23 | g14416.t1 | PANTHER | PTHR45617 | - | 779 | 985 | 6.0E-217 |
| 17 | g14416.t1 | PANTHER | PTHR45617:SF42 | LEUCINE RICH REPEAT CONTAINING G PROTEIN-COUPLED RECEPTOR 6 | 850 | 1068 | 6.0E-217 |
| 27 | g14416.t1 | PANTHER | PTHR45617 | - | 850 | 1068 | 6.0E-217 |
| 12 | g14416.t1 | PANTHER | PTHR45617:SF42 | LEUCINE RICH REPEAT CONTAINING G PROTEIN-COUPLED RECEPTOR 6 | 956 | 1210 | 6.0E-217 |
| 22 | g14416.t1 | PANTHER | PTHR45617 | - | 956 | 1210 | 6.0E-217 |
| 19 | g14416.t1 | PANTHER | PTHR45617:SF42 | LEUCINE RICH REPEAT CONTAINING G PROTEIN-COUPLED RECEPTOR 6 | 1200 | 1415 | 6.0E-217 |
| 29 | g14416.t1 | PANTHER | PTHR45617 | - | 1200 | 1415 | 6.0E-217 |
| 11 | g14416.t1 | PANTHER | PTHR45617:SF42 | LEUCINE RICH REPEAT CONTAINING G PROTEIN-COUPLED RECEPTOR 6 | 1485 | 1764 | 6.0E-217 |
| 21 | g14416.t1 | PANTHER | PTHR45617 | - | 1485 | 1764 | 6.0E-217 |
| 2 | g14416.t1 | Pfam | PF13855 | Leucine rich repeat | 133 | 187 | 2.1E-8 |
| 9 | g14416.t1 | Pfam | PF13306 | BspA type Leucine rich repeat region (6 copies) | 220 | 347 | 4.0E-10 |
| 10 | g14416.t1 | Pfam | PF13306 | BspA type Leucine rich repeat region (6 copies) | 455 | 535 | 9.2E-5 |
| 4 | g14416.t1 | Pfam | PF13855 | Leucine rich repeat | 548 | 603 | 1.2E-12 |
| 3 | g14416.t1 | Pfam | PF13855 | Leucine rich repeat | 822 | 880 | 3.5E-10 |
| 6 | g14416.t1 | Pfam | PF13855 | Leucine rich repeat | 942 | 1001 | 1.2E-10 |
| 7 | g14416.t1 | Pfam | PF13855 | Leucine rich repeat | 1172 | 1230 | 5.2E-8 |
| 1 | g14416.t1 | Pfam | PF13855 | Leucine rich repeat | 1292 | 1350 | 1.1E-13 |
| 8 | g14416.t1 | Pfam | PF13855 | Leucine rich repeat | 1516 | 1574 | 5.1E-12 |
| 5 | g14416.t1 | Pfam | PF13855 | Leucine rich repeat | 1636 | 1695 | 4.1E-10 |
| 43 | g14416.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 44 | g14416.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 45 | g14416.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 15 | - |
| 46 | g14416.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 19 | - |
| 42 | g14416.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 1773 | - |
| 132 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 129 | 150 | 4.816 |
| 121 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 153 | 174 | 6.411 |
| 134 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 201 | 222 | 5.048 |
| 130 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 225 | 246 | 9.029 |
| 113 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 273 | 294 | 7.165 |
| 119 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 297 | 318 | 4.793 |
| 118 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 322 | 343 | 6.187 |
| 114 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 476 | 497 | 7.404 |
| 129 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 523 | 544 | 6.734 |
| 110 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 548 | 569 | 6.95 |
| 126 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 572 | 593 | 7.889 |
| 138 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 620 | 641 | 5.979 |
| 106 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 644 | 665 | 6.249 |
| 120 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 669 | 690 | 5.271 |
| 109 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 693 | 714 | 5.063 |
| 136 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 822 | 843 | 6.095 |
| 137 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 846 | 867 | 5.687 |
| 107 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 869 | 890 | 5.325 |
| 128 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 894 | 915 | 6.988 |
| 135 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 942 | 963 | 4.632 |
| 127 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 966 | 987 | 5.471 |
| 111 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 990 | 1011 | 6.726 |
| 133 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1172 | 1193 | 6.919 |
| 115 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1196 | 1217 | 5.671 |
| 122 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1219 | 1240 | 5.155 |
| 124 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1244 | 1265 | 5.856 |
| 125 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1268 | 1289 | 5.571 |
| 105 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1292 | 1313 | 4.986 |
| 131 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1316 | 1337 | 4.778 |
| 117 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1516 | 1537 | 6.434 |
| 104 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1540 | 1561 | 5.787 |
| 112 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1563 | 1584 | 6.226 |
| 108 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1588 | 1609 | 6.295 |
| 123 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1612 | 1633 | 5.263 |
| 116 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1660 | 1681 | 6.665 |
| 103 | g14416.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1684 | 1705 | 5.941 |
| 75 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 127 | 150 | 140.0 |
| 77 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 152 | 174 | 11.0 |
| 51 | g14416.t1 | SMART | SM00364 | LRR_bac_2 | 199 | 218 | 290.0 |
| 65 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 223 | 246 | 0.0066 |
| 94 | g14416.t1 | SMART | SM00365 | LRR_sd22_2 | 223 | 244 | 280.0 |
| 85 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 247 | 270 | 280.0 |
| 54 | g14416.t1 | SMART | SM00364 | LRR_bac_2 | 271 | 290 | 380.0 |
| 59 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 271 | 294 | 0.072 |
| 93 | g14416.t1 | SMART | SM00365 | LRR_sd22_2 | 271 | 289 | 170.0 |
| 91 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 295 | 318 | 7.4 |
| 62 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 320 | 343 | 13.0 |
| 60 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 474 | 497 | 2.5 |
| 66 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 549 | 569 | 63.0 |
| 52 | g14416.t1 | SMART | SM00364 | LRR_bac_2 | 570 | 589 | 180.0 |
| 87 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 570 | 593 | 1.8E-4 |
| 96 | g14416.t1 | SMART | SM00365 | LRR_sd22_2 | 570 | 599 | 280.0 |
| 53 | g14416.t1 | SMART | SM00364 | LRR_bac_2 | 618 | 637 | 560.0 |
| 64 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 618 | 641 | 1.2 |
| 73 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 642 | 665 | 0.018 |
| 92 | g14416.t1 | SMART | SM00365 | LRR_sd22_2 | 642 | 660 | 480.0 |
| 83 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 796 | 819 | 220.0 |
| 89 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 820 | 843 | 96.0 |
| 50 | g14416.t1 | SMART | SM00364 | LRR_bac_2 | 844 | 863 | 210.0 |
| 63 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 845 | 867 | 53.0 |
| 55 | g14416.t1 | SMART | SM00364 | LRR_bac_2 | 892 | 911 | 19.0 |
| 102 | g14416.t1 | SMART | SM00365 | LRR_sd22_2 | 892 | 918 | 260.0 |
| 69 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 895 | 915 | 32.0 |
| 88 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 916 | 939 | 31.0 |
| 68 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 940 | 963 | 260.0 |
| 58 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 964 | 987 | 0.038 |
| 49 | g14416.t1 | SMART | SM00364 | LRR_bac_2 | 988 | 1008 | 550.0 |
| 84 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 988 | 1011 | 3.5E-4 |
| 100 | g14416.t1 | SMART | SM00365 | LRR_sd22_2 | 988 | 1009 | 200.0 |
| 56 | g14416.t1 | SMART | SM00364 | LRR_bac_2 | 1170 | 1189 | 490.0 |
| 61 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 1170 | 1193 | 5.1 |
| 101 | g14416.t1 | SMART | SM00365 | LRR_sd22_2 | 1170 | 1196 | 350.0 |
| 79 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 1194 | 1217 | 0.86 |
| 97 | g14416.t1 | SMART | SM00365 | LRR_sd22_2 | 1217 | 1243 | 130.0 |
| 80 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 1243 | 1265 | 98.0 |
| 82 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 1266 | 1289 | 58.0 |
| 74 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 1290 | 1313 | 11.0 |
| 67 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 1314 | 1337 | 16.0 |
| 90 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 1338 | 1361 | 8.6 |
| 72 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 1514 | 1537 | 8.3 |
| 86 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 1539 | 1561 | 82.0 |
| 76 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 1562 | 1584 | 240.0 |
| 57 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 1586 | 1609 | 42.0 |
| 95 | g14416.t1 | SMART | SM00365 | LRR_sd22_2 | 1586 | 1615 | 750.0 |
| 70 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 1610 | 1633 | 11.0 |
| 81 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 1634 | 1657 | 170.0 |
| 48 | g14416.t1 | SMART | SM00364 | LRR_bac_2 | 1658 | 1677 | 140.0 |
| 78 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 1658 | 1681 | 7.8E-4 |
| 99 | g14416.t1 | SMART | SM00365 | LRR_sd22_2 | 1658 | 1680 | 510.0 |
| 71 | g14416.t1 | SMART | SM00369 | LRR_typ_2 | 1682 | 1705 | 20.0 |
| 98 | g14416.t1 | SMART | SM00365 | LRR_sd22_2 | 1682 | 1703 | 84.0 |
| 34 | g14416.t1 | SUPERFAMILY | SSF52058 | L domain-like | 89 | 357 | 5.44E-37 |
| 35 | g14416.t1 | SUPERFAMILY | SSF52058 | L domain-like | 443 | 703 | 8.5E-37 |
| 32 | g14416.t1 | SUPERFAMILY | SSF52058 | L domain-like | 782 | 1050 | 1.36E-41 |
| 33 | g14416.t1 | SUPERFAMILY | SSF52058 | L domain-like | 1137 | 1402 | 1.36E-34 |
| 31 | g14416.t1 | SUPERFAMILY | SSF52058 | L domain-like | 1484 | 1744 | 7.48E-34 |
| 36 | g14416.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 17 | - |
| 47 | g14416.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 22 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
