Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Heat shock protein 75 kDa, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14417 g14417.t2 TSS g14417.t2 405307 405307
chr_4 g14417 g14417.t2 isoform g14417.t2 405396 405973
chr_4 g14417 g14417.t2 exon g14417.t2.exon1 405396 405477
chr_4 g14417 g14417.t2 cds g14417.t2.CDS1 405396 405477
chr_4 g14417 g14417.t2 exon g14417.t2.exon2 405539 405973
chr_4 g14417 g14417.t2 cds g14417.t2.CDS2 405539 405972
chr_4 g14417 g14417.t2 TTS g14417.t2 405948 405948

Sequences

>g14417.t2 Gene=g14417 Length=517
ATGAGTCTAAAAATTGCAACAAGAAGTGTACTAAGATGCAAAAGTAGTTTTATGTCATTT
AGTAAAACCTGGAATTATCGAGTTAATAAGTCAATAATACCAGCACTTACTCAAACGACA
ATTGCTCATTATCATTCAATAATTCGTGAATCAGAAAAAGTTAAAGGTGAAGCTGATAGA
CATGAGTTTAAAGCAGAAACAAGGATGTTACTGGACATTGTTGCTAAATCTTTATATTCA
GAAAATGAAGTTTTTGTCCGAGAGTTAATATCAAATGCAAGTGATGCTATTGAAAAATTT
CGATATATTTCAAGTACAAAACCTGATGATGTAATTGATTTGGATCGAAAACTTGAAATC
CATATTGAAACAAATAAACAAAATAGAACACTCATCATACAAGACACTGGTATTGGAATG
ACCAAAGAAGAAATGATTGATGCACTTGGTACTATTGCCAGAAGTGGTTCAAAAAACTTT
CTACAACAGATTCAAAAAGGAAAAGAACAAGGAGCTG

>g14417.t2 Gene=g14417 Length=172
MSLKIATRSVLRCKSSFMSFSKTWNYRVNKSIIPALTQTTIAHYHSIIRESEKVKGEADR
HEFKAETRMLLDIVAKSLYSENEVFVRELISNASDAIEKFRYISSTKPDDVIDLDRKLEI
HIETNKQNRTLIIQDTGIGMTKEEMIDALGTIARSGSKNFLQQIQKGKEQGA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g14417.t2 Gene3D G3DSA:3.30.565.10 - 45 172 1.2E-38
2 g14417.t2 PANTHER PTHR11528:SF44 HEAT SHOCK PROTEIN 75 KDA, MITOCHONDRIAL-RELATED 29 170 4.7E-58
3 g14417.t2 PANTHER PTHR11528 HEAT SHOCK PROTEIN 90 FAMILY MEMBER 29 170 4.7E-58
4 g14417.t2 PRINTS PR00775 90kDa heat shock protein signature 59 79 3.7E-30
6 g14417.t2 PRINTS PR00775 90kDa heat shock protein signature 80 102 3.7E-30
5 g14417.t2 PRINTS PR00775 90kDa heat shock protein signature 130 147 3.7E-30
7 g14417.t2 PRINTS PR00775 90kDa heat shock protein signature 148 165 3.7E-30
1 g14417.t2 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 82 159 2.6E-7
8 g14417.t2 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 60 168 5.24E-30
9 g14417.t2 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 11 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0005524 ATP binding MF
GO:0051082 unfolded protein binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed