Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock protein 75 kDa, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14417 g14417.t3 TSS g14417.t3 405307 405307
chr_4 g14417 g14417.t3 isoform g14417.t3 405396 408513
chr_4 g14417 g14417.t3 exon g14417.t3.exon1 405396 405477
chr_4 g14417 g14417.t3 cds g14417.t3.CDS1 405396 405477
chr_4 g14417 g14417.t3 exon g14417.t3.exon2 405539 405988
chr_4 g14417 g14417.t3 cds g14417.t3.CDS2 405539 405988
chr_4 g14417 g14417.t3 TTS g14417.t3 405948 405948
chr_4 g14417 g14417.t3 exon g14417.t3.exon3 406050 406372
chr_4 g14417 g14417.t3 cds g14417.t3.CDS3 406050 406372
chr_4 g14417 g14417.t3 exon g14417.t3.exon4 406557 407146
chr_4 g14417 g14417.t3 cds g14417.t3.CDS4 406557 406583
chr_4 g14417 g14417.t3 exon g14417.t3.exon5 407215 407627
chr_4 g14417 g14417.t3 exon g14417.t3.exon6 407698 407964
chr_4 g14417 g14417.t3 exon g14417.t3.exon7 408097 408513

Sequences

>g14417.t3 Gene=g14417 Length=2542
ATGAGTCTAAAAATTGCAACAAGAAGTGTACTAAGATGCAAAAGTAGTTTTATGTCATTT
AGTAAAACCTGGAATTATCGAGTTAATAAGTCAATAATACCAGCACTTACTCAAACGACA
ATTGCTCATTATCATTCAATAATTCGTGAATCAGAAAAAGTTAAAGGTGAAGCTGATAGA
CATGAGTTTAAAGCAGAAACAAGGATGTTACTGGACATTGTTGCTAAATCTTTATATTCA
GAAAATGAAGTTTTTGTCCGAGAGTTAATATCAAATGCAAGTGATGCTATTGAAAAATTT
CGATATATTTCAAGTACAAAACCTGATGATGTAATTGATTTGGATCGAAAACTTGAAATC
CATATTGAAACAAATAAACAAAATAGAACACTCATCATACAAGACACTGGTATTGGAATG
ACCAAAGAAGAAATGATTGATGCACTTGGTACTATTGCCAGAAGTGGTTCAAAAAACTTT
CTACAACAGATTCAAAAAGGAAAAGAACAAGGAGCTGCTGCTAATATTATTGGACAATTT
GGTGTTGGTTTTTATTCAGCATTTATGTGTGCCACTCATGTCGAAGTCTATTCAAGAGCA
TCAAATAACACTGATAGTGTTGGATATAAATGGTCAAGTGATGGCACTGGATCATTTGAA
ATTCAAGAATGTGATGATGTTGCAGTTGGAACTAAAATTGTAGTTCATTTAAAACCTGAA
TGTCGTGAATATGCAGAAGAAAATCGAATTCATGATGTAATTAAAAAATACAGCAATTTT
GTTGGTTCGCCAATTTTTCTTAATGGAAATCAAGTCAATTTAGTTCACCCATTATGGCTT
ATGGAACCAAAAGATAAGGAAAACCTGGTCTTTTTGAAATGAGTAGAGATGCCGATACAG
GTATTGCTTTATATACTCGCAAAATTCTCATTCAATCAAAGACTGACTTGATGCTTCCAA
AATGGCTTAGATTTGTGAAAGGTGTTGTAGATAGTGAAGACATTCCACTCAATCTTAGTC
GTGAATTACTTCAAAACAGTAATTTGATAAGAAGACTAAGAAATGTTCTTACATCGCGAG
TCCTCAAATTTCTGTATGATAAATCAGTAAAAGATCCAGAAAATTATGAAAAATTCTACA
AAGATTATGGATTATTTCTTAAAGAAGGAATTGTAACAACACAAGATCAGCCAGAAAAAG
AAGATATTGCAAAATTGTTGAGATTTGAAACAAACAAAATAAAAGAAGGCACAAGAATAG
GAATCGATGATTATATTAAGCAGTTGAAAGAAGGCCAGAAAGATATTTACTATTTGGCAG
CTCCATCAAGGGAATTGGCATTAAATTCTCCATATTTTGAAAGTTTACAAAAACAAGATT
ATCCAGTACTTTTTTGCTATGAACCATACGATGAACTTGTATTAATGCAATTAATTAGTT
ATAAGTCTCGTAAGTGTTGAAAAAGAAGTTCGCAGGGCAACAACAGTTGAAGAAAATGAC
AAAATATTTGATGAAACTTCGAAGGAAGCACTTTCGAGACGTGAGACTGATGAACTTGTA
AGATTTTTAAAAAAAGAGCTTGGACATAAAGTAGCAAATGTGAAATACACAAACAAACTT
GACCATCATCCATGTATTGTAACAGTTGAAGATATGGCAGCAGCTCGGCATTTTATTAAA
ACGCAAAGTCATCAATTGAGTGAAGATAATCGTTATGCATTGCTTCAATCACATTTAGAA
ATCAATCCAAGACATCCAATTATCAGAAAATTATCAAAATTATCGACGACTGATGAAAAA
CTTGCATCATTATTAGCTCATCAACTTTTTAGTAATGCTATGACAACTGCTGGTCTTGTC
GATGATCCACGGTTACTGTTAACACAAATGAATGAACTTCTAATTAAAGTTCTTGAAAAG
TTTTAAAAGAGAAATTAATTTGCATACAAGTGTATTTTTAGAGCATTTTTGGAACAACAA
TGCAGCTTATATCTTCACTTTGACTGGCTCCCGGTTGAGTATTTGATTTGTGCTATCGAG
TTATTGTCGGCAATCTTTATTAGAATGTGTTTACTTATTGCATTATTTAGGAAAGTACGA
GTTTAAATTTCCATATTGAAAATTTTAAATTAAAATCAATTAAAAACGGTCACCGTACTT
TCATACATCAAAATTTAATAATATGATTTCTGCTATTATATAGCAGTGCTATATTTTAAA
TTTATTTCAAAATGTGATTCTAGTTCTCAAACAAAACTAATAATTCTGTTATTTGTCAAC
ATACACTGATCTAGGCACCAAAAATGCGCTAAAGTAATCCGTTCTATAGTGAACATTTTC
GGTATCATTTATATTTAATTAATAAAAAATGAATTTTAAATAAAAAAATATAATAGACAT
AAACTATCAGATTATAGTCTTTTCTAGCATAAAATATAAAATTTAAAATTTTAACAAGAA
ATTATTGAAAGCTTGTCCTAAAATACAATCAAGCGTAAGAACAAGCAACTCCCTAAAAAT
TAATTTAAAAATGTTATAAGTT

>g14417.t3 Gene=g14417 Length=293
MSLKIATRSVLRCKSSFMSFSKTWNYRVNKSIIPALTQTTIAHYHSIIRESEKVKGEADR
HEFKAETRMLLDIVAKSLYSENEVFVRELISNASDAIEKFRYISSTKPDDVIDLDRKLEI
HIETNKQNRTLIIQDTGIGMTKEEMIDALGTIARSGSKNFLQQIQKGKEQGAAANIIGQF
GVGFYSAFMCATHVEVYSRASNNTDSVGYKWSSDGTGSFEIQECDDVAVGTKIVVHLKPE
CREYAEENRIHDVIKKYSNFVGSPIFLNGNQVNLVHPLWLMEPKDKENLVFLK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g14417.t3 CDD cd16927 HATPase_Hsp90-like 70 261 9.15814E-96
13 g14417.t3 Gene3D G3DSA:3.30.565.10 - 45 275 6.7E-76
2 g14417.t3 PANTHER PTHR11528:SF44 HEAT SHOCK PROTEIN 75 KDA, MITOCHONDRIAL-RELATED 29 285 2.2E-114
3 g14417.t3 PANTHER PTHR11528 HEAT SHOCK PROTEIN 90 FAMILY MEMBER 29 285 2.2E-114
4 g14417.t3 PRINTS PR00775 90kDa heat shock protein signature 59 79 3.1E-56
6 g14417.t3 PRINTS PR00775 90kDa heat shock protein signature 80 102 3.1E-56
5 g14417.t3 PRINTS PR00775 90kDa heat shock protein signature 130 147 3.1E-56
10 g14417.t3 PRINTS PR00775 90kDa heat shock protein signature 148 165 3.1E-56
9 g14417.t3 PRINTS PR00775 90kDa heat shock protein signature 177 199 3.1E-56
7 g14417.t3 PRINTS PR00775 90kDa heat shock protein signature 229 246 3.1E-56
8 g14417.t3 PRINTS PR00775 90kDa heat shock protein signature 247 265 3.1E-56
1 g14417.t3 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 82 206 1.1E-12
15 g14417.t3 SMART SM00387 HKATPase_4 81 241 9.2E-4
11 g14417.t3 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 60 273 1.13E-59
12 g14417.t3 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 11 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0005524 ATP binding MF
GO:0051082 unfolded protein binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values