General information for g14427.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14427 is located on chr_4: 458594..459907 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14427 | g14427.t1 | TSS | g14427.t1 | 458554 | 458554 |
| chr_4 | g14427 | g14427.t1 | isoform | g14427.t1 | 458594 | 459907 |
| chr_4 | g14427 | g14427.t1 | exon | g14427.t1.exon1 | 458594 | 459115 |
| chr_4 | g14427 | g14427.t1 | cds | g14427.t1.CDS1 | 458594 | 459115 |
| chr_4 | g14427 | g14427.t1 | exon | g14427.t1.exon2 | 459173 | 459907 |
| chr_4 | g14427 | g14427.t1 | cds | g14427.t1.CDS2 | 459173 | 459907 |
| chr_4 | g14427 | g14427.t1 | TTS | g14427.t1 | 460060 | 460060 |
Sequences
>g14427.t1 Gene=g14427 Length=1257
ATGTTTTCGATTGAATGTAAATTTGCAGAATGGGCATGGATTGATGAACACCGTTATACG
TGCAATATAAAACGCAAAAATATTCCTGAAAATCAATCAGCGATTCTCGATGGACGTCAC
CTAGTACCACATACAAATTTCGACGTCACTGGAATTAGTTTTTTATCTTGTCGATTGACA
AAAATTCCAAAGAATTTATTGTTAAAAAGTTTTAGCCTTTTACAAGCATTAGCAGTGTCT
AATTGTGGTTTACGTGAAATAAAACGTGAAGATCTAATTGGATTACACGATTTAAGAGTT
TTGTGGTTGAATGACAATGAAATTGAATTTCTACCAGGAGATTTATTTATTGATATGAAA
AAACTTGAATATGTTTCATTTGAAAAGAACAAAATCAGATTTATTGATGCTGAGCTATTG
GATCCATTACCAAATTTAAAATTGATCAACTTTTATGGAAATGTTGCAATTGATAAAGTT
TATAATAGTACTTTTTCGACACAAGGAAATGCTTCACTCGAGGGCATAAAAATTGAAATT
CGTACAAAATGTCGACCACCATTTAGAGAAAATCCTAAAAAACTTGAAGAAAATGAAGAA
CTTCGCGAACAGTTGAACAAAAGAGATAAAGAAATTGAAATTCTTAATGAAAAAGTTAAT
AATTCAATGGCAAATGAAGCTTCACTTCATGAAGAAATTTCAAAAATGCAAAAAGAAACA
AAAAAATTCAAAATTTTAGATGACATCATGATAATTGCTAGAGATGAAGATTTCAAAGAT
TTTACTATTCTCACAAGAGGTGAAAAATTCAAACTTCACAAATTTATCATTGCTGCAAGA
AGTCCAACAATTAAAAGGATAATAAAAATTCGTCCAGAAACTGAAAGTGTGACTTTCACA
GATATTCCTTCATCTGCTTTTCGCGAACTTTTAAAATATTTCTATGACAACGAATTTCCT
TCAAATGATGCAAATTTCAAAAACATTTTAGTGACTGCTTATAAACTTGAAATCGATGAA
ATTAAAAATTATTCACTAAATAAATTATTCGAATCATTGAATGAAGAAAATGCTTTGGAA
ATTTTGACATTAGCTAACAAATTTGATATTGAAATTTTAAGAACCAAAGCATTTGAAGAA
ATTCAGAAAGTTTTTCCCGAACGTGAATTGAAAATTGAAATTGCAACCGATGTCGGAAAA
ATTAAAAAATTAATTGAAGCAAAAAAGAAATTTGATGAAGAATTTAAAAATTTGTGA
>g14427.t1 Gene=g14427 Length=418
MFSIECKFAEWAWIDEHRYTCNIKRKNIPENQSAILDGRHLVPHTNFDVTGISFLSCRLT
KIPKNLLLKSFSLLQALAVSNCGLREIKREDLIGLHDLRVLWLNDNEIEFLPGDLFIDMK
KLEYVSFEKNKIRFIDAELLDPLPNLKLINFYGNVAIDKVYNSTFSTQGNASLEGIKIEI
RTKCRPPFRENPKKLEENEELREQLNKRDKEIEILNEKVNNSMANEASLHEEISKMQKET
KKFKILDDIMIIARDEDFKDFTILTRGEKFKLHKFIIAARSPTIKRIIKIRPETESVTFT
DIPSSAFRELLKYFYDNEFPSNDANFKNILVTAYKLEIDEIKNYSLNKLFESLNEENALE
ILTLANKFDIEILRTKAFEEIQKVFPERELKIEIATDVGKIKKLIEAKKKFDEEFKNL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g14427.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 260 | 336 | 1.34666E-13 |
| 9 | g14427.t1 | Coils | Coil | Coil | 195 | 218 | - |
| 8 | g14427.t1 | Coils | Coil | Coil | 401 | 418 | - |
| 6 | g14427.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 12 | 179 | 4.5E-19 |
| 7 | g14427.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 224 | 383 | 1.2E-26 |
| 3 | g14427.t1 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 213 | 379 | 6.0E-14 |
| 1 | g14427.t1 | Pfam | PF13855 | Leucine rich repeat | 98 | 153 | 2.6E-8 |
| 2 | g14427.t1 | Pfam | PF00651 | BTB/POZ domain | 256 | 343 | 8.4E-15 |
| 14 | g14427.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 259 | 323 | 13.839 |
| 11 | g14427.t1 | SMART | SM00369 | LRR_typ_2 | 95 | 118 | 0.1 |
| 12 | g14427.t1 | SMART | SM00369 | LRR_typ_2 | 119 | 142 | 60.0 |
| 13 | g14427.t1 | SMART | SM00225 | BTB_4 | 259 | 353 | 1.6E-12 |
| 4 | g14427.t1 | SUPERFAMILY | SSF52058 | L domain-like | 49 | 166 | 3.44E-18 |
| 5 | g14427.t1 | SUPERFAMILY | SSF54695 | POZ domain | 244 | 352 | 1.14E-16 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed