General information for g14427.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14427 is located on chr_4: 458594..459907 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14427 | g14427.t2 | TSS | g14427.t2 | 458554 | 458554 |
| chr_4 | g14427 | g14427.t2 | isoform | g14427.t2 | 458594 | 459141 |
| chr_4 | g14427 | g14427.t2 | exon | g14427.t2.exon1 | 458594 | 459141 |
| chr_4 | g14427 | g14427.t2 | cds | g14427.t2.CDS1 | 458594 | 459136 |
| chr_4 | g14427 | g14427.t2 | TTS | g14427.t2 | 460060 | 460060 |
Sequences
>g14427.t2 Gene=g14427 Length=548
ATGTTTTCGATTGAATGTAAATTTGCAGAATGGGCATGGATTGATGAACACCGTTATACG
TGCAATATAAAACGCAAAAATATTCCTGAAAATCAATCAGCGATTCTCGATGGACGTCAC
CTAGTACCACATACAAATTTCGACGTCACTGGAATTAGTTTTTTATCTTGTCGATTGACA
AAAATTCCAAAGAATTTATTGTTAAAAAGTTTTAGCCTTTTACAAGCATTAGCAGTGTCT
AATTGTGGTTTACGTGAAATAAAACGTGAAGATCTAATTGGATTACACGATTTAAGAGTT
TTGTGGTTGAATGACAATGAAATTGAATTTCTACCAGGAGATTTATTTATTGATATGAAA
AAACTTGAATATGTTTCATTTGAAAAGAACAAAATCAGATTTATTGATGCTGAGCTATTG
GATCCATTACCAAATTTAAAATTGATCAACTTTTATGGAAATGTTGCAATTGATAAAGTT
TATAATAGTACTTTTTCGACACAAGGAAATGCTTCACTCGAGGTAAAAATGTATTTTTAT
TAAGAACA
>g14427.t2 Gene=g14427 Length=180
MFSIECKFAEWAWIDEHRYTCNIKRKNIPENQSAILDGRHLVPHTNFDVTGISFLSCRLT
KIPKNLLLKSFSLLQALAVSNCGLREIKREDLIGLHDLRVLWLNDNEIEFLPGDLFIDMK
KLEYVSFEKNKIRFIDAELLDPLPNLKLINFYGNVAIDKVYNSTFSTQGNASLEVKMYFY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14427.t2 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 12 | 175 | 0.0 |
| 2 | g14427.t2 | PANTHER | PTHR45712 | AGAP008170-PA | 39 | 166 | 0.0 |
| 3 | g14427.t2 | PANTHER | PTHR45712:SF22 | AGAP008170-PA | 39 | 166 | 0.0 |
| 1 | g14427.t2 | Pfam | PF13855 | Leucine rich repeat | 98 | 154 | 0.0 |
| 5 | g14427.t2 | SMART | SM00369 | LRR_typ_2 | 95 | 118 | 0.1 |
| 6 | g14427.t2 | SMART | SM00369 | LRR_typ_2 | 119 | 142 | 60.0 |
| 4 | g14427.t2 | SUPERFAMILY | SSF52058 | L domain-like | 49 | 166 | 0.0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed