General information for g14433.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Eukaryotic translation initiation factor 4 gamma 1.
Parent gene
- The parent gene g14433 is located on chr_4: 499943..502207 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14433 | g14433.t1 | isoform | g14433.t1 | 483787 | 500711 |
| chr_4 | g14433 | g14433.t1 | exon | g14433.t1.exon1 | 483787 | 484006 |
| chr_4 | g14433 | g14433.t1 | cds | g14433.t1.CDS1 | 483787 | 484006 |
| chr_4 | g14433 | g14433.t1 | exon | g14433.t1.exon2 | 484064 | 484364 |
| chr_4 | g14433 | g14433.t1 | cds | g14433.t1.CDS2 | 484064 | 484364 |
| chr_4 | g14433 | g14433.t1 | exon | g14433.t1.exon3 | 484426 | 484435 |
| chr_4 | g14433 | g14433.t1 | cds | g14433.t1.CDS3 | 484426 | 484435 |
| chr_4 | g14433 | g14433.t1 | exon | g14433.t1.exon4 | 487572 | 487615 |
| chr_4 | g14433 | g14433.t1 | cds | g14433.t1.CDS4 | 487572 | 487615 |
| chr_4 | g14433 | g14433.t1 | exon | g14433.t1.exon5 | 494923 | 494997 |
| chr_4 | g14433 | g14433.t1 | cds | g14433.t1.CDS5 | 494923 | 494997 |
| chr_4 | g14433 | g14433.t1 | exon | g14433.t1.exon6 | 495178 | 495279 |
| chr_4 | g14433 | g14433.t1 | cds | g14433.t1.CDS6 | 495178 | 495279 |
| chr_4 | g14433 | g14433.t1 | exon | g14433.t1.exon7 | 495407 | 495641 |
| chr_4 | g14433 | g14433.t1 | cds | g14433.t1.CDS7 | 495407 | 495641 |
| chr_4 | g14433 | g14433.t1 | exon | g14433.t1.exon8 | 495705 | 495818 |
| chr_4 | g14433 | g14433.t1 | cds | g14433.t1.CDS8 | 495705 | 495818 |
| chr_4 | g14433 | g14433.t1 | exon | g14433.t1.exon9 | 495877 | 496091 |
| chr_4 | g14433 | g14433.t1 | cds | g14433.t1.CDS9 | 495877 | 496091 |
| chr_4 | g14433 | g14433.t1 | exon | g14433.t1.exon10 | 496151 | 496981 |
| chr_4 | g14433 | g14433.t1 | cds | g14433.t1.CDS10 | 496151 | 496981 |
| chr_4 | g14433 | g14433.t1 | exon | g14433.t1.exon11 | 497042 | 497357 |
| chr_4 | g14433 | g14433.t1 | cds | g14433.t1.CDS11 | 497042 | 497357 |
| chr_4 | g14433 | g14433.t1 | exon | g14433.t1.exon12 | 497425 | 497629 |
| chr_4 | g14433 | g14433.t1 | cds | g14433.t1.CDS12 | 497425 | 497629 |
| chr_4 | g14433 | g14433.t1 | exon | g14433.t1.exon13 | 497692 | 497930 |
| chr_4 | g14433 | g14433.t1 | cds | g14433.t1.CDS13 | 497692 | 497930 |
| chr_4 | g14433 | g14433.t1 | exon | g14433.t1.exon14 | 497993 | 498268 |
| chr_4 | g14433 | g14433.t1 | cds | g14433.t1.CDS14 | 497993 | 498268 |
| chr_4 | g14433 | g14433.t1 | exon | g14433.t1.exon15 | 498331 | 499156 |
| chr_4 | g14433 | g14433.t1 | cds | g14433.t1.CDS15 | 498331 | 499156 |
| chr_4 | g14433 | g14433.t1 | exon | g14433.t1.exon16 | 499220 | 500210 |
| chr_4 | g14433 | g14433.t1 | cds | g14433.t1.CDS16 | 499220 | 500210 |
| chr_4 | g14433 | g14433.t1 | exon | g14433.t1.exon17 | 500405 | 500711 |
| chr_4 | g14433 | g14433.t1 | cds | g14433.t1.CDS17 | 500405 | 500711 |
| chr_4 | g14433 | g14433.t1 | TSS | g14433.t1 | NA | NA |
| chr_4 | g14433 | g14433.t1 | TTS | g14433.t1 | NA | NA |
Sequences
>g14433.t1 Gene=g14433 Length=5307
ATGAGTTTGAGGAATTTTGTACCATCGTATCCTCAATTATCGGTGAATGGACCACCACCA
CATCATCAGACACATCGCGTTCAAGCGCTTCCTGTAAGCGTCGCAACTGCCTTACAACAG
CAAATTTCACAGCAGCAACAGCAACAGCAAACACAGCAAGGCGGATCGTCACAATCGAAT
CCTAATGGAAATGGCTCAGGCAATGTACAAGCATCATCGCATGATGCATATCATGTTGCA
CCTTGTCTACAATTTCAAGCACCAGCAGGCGCAAATATAGCTCCCAATTTTATCAGACAT
ATGTCGAACGGAGCCTATCAAGCTCATCCACAGAATCCCTATCAGACACAAGTTCCACCA
CCACAGGCACAACAGCCAACGAATCCACCTCAGTCACTTACAAATTCGGCGCCATCACAG
CAAGGTCGTTTGACAACAATGGCGCCACCAACAGCGCCACCAACACCACCAACACAACAG
CAACAGCAGCAAACTCCACAAACAGCACCATATGCAGTTCAGCAAGGTGCTGCAACTGGT
CATCGTAATGCTCAACAGTATCCACGTCCACAGCAACAAGTACCGCGTCGAACGCAGCAG
CAAACACCACAGACTTACATGTATCAAACAACAGCATTTCCTCAATCGTTTCTTCCTCAA
TTCATTCCAAGTGGCCACATTCGTGCACAACCTATGCAGTTGCCGCATCAATTTTCCTCA
CAGGTTTATCAACCAATGGCAACACCGCTATATTTTAACCCACAGGCACCAGCCTTTCAA
CAAATAACTGCACCAACGACTAATGGTCAACGTCAGACGGCAACACCGACAACAGTTCCA
CCGACATCAATGGGTCCTGCTGCAAATGAATATCCTTCATATAATGTTTATGATATGCCA
CCAGTTATACAACAACCAGCAACAACACAACCTCCACCTCAAAAGACAACAAAAAAACCT
GGAAGTTTTGCCATAAAAATTATTAATCCAAACACTGGCAAAGATATTTTCGATGAGGAT
GGTAATGGTGCTGTGACGACAAGTGGAAGTGTTAGCAGTAGTAATAGTAACAATAATATT
AGTAGCAGTAATAGTAGCATTAATAATAGCATCAGTAGTGGTGTTGATGATAAAGTGTCG
TCGAATGTCACTGAACATCATCTGCATCATCACAGTGGAAAAGAAGAATCGGTCGAGAAA
GAAAATGCTGAACCACTGACTCCAGTTGTTAGCGCTATGAGCGATGGACCATCAGTGGAT
ATTACGCCTAAACATCAAGTCAATAAAGTCAAGAAAATTAAACCTCCAGAACAAATTCCA
TCACAACAACAACAGCAGTCACAGTCATTGTCCGTACAGAATAGTAATCAAAGTAGTCAG
CCATCAATGGTCGTGCCACAATTAGCCGATCCACCAAAACATATTAAAATTGAAGCTCCA
AAACAGGAAATTCCAGAGCAGCAACAACAGCAGCAGCAGCAAGTAATAATAACTTCACAG
CCAGTGCAAGATAGTGAAAATAACAACAGTAGTACTATTGAACAAGTGCAAGAAACTATC
GAAACTGAGCTAATTGTATCATCACCAGCACCGTCACAATCAACAACAGCAGCTGTTGAA
GTTAACGAAGTTAATGACACAAATAACAATAGCTATCAAACAAAGGATGATGAACCAAAT
GAAAATGAAGTTTTAAATGAACCGAATGAAAGTGATGAAACTGATCGAGCAGTTGTGATG
GAACCACAAGATACAAATAATAACAATTCAACAGAGACTGATGAAAAAATAGCACCAGTT
GATGGACCAATTAATTATGATGAAGATCAATGGAGTCCAGCTAATTTAAGTGGCAAAAAA
TACTATACAAGAGATCAACTTTTAAAGCTTAAAGATGCAGTTATGGTGCCACCAATTCGT
CTACCCGATGGTGTTGCAGGTCAATTGTCGAAGAACAACAAAGAATATCTTACAAACACA
TTGACACAAGTGATGCCACCTATGGGTATGCGAACACCATACGATGCCATTAATAGTGTT
GCACCCAAGTTTATGATGAACACTCCCGGTAATCGTAATCCTTATCAAACTAAAAGACCT
AGTCAACAAGGAAATCAACAAAAGGTGCCTGGTCGTGGTGGTTCACAAACTGGTCCCGAT
CGTCAAATTTTGAAGATCAATTTGAGTCTACACGATGATGTTAAGCTCAATGAATCAGAA
AATGCATGGAAACCGACACATTTGAAAAAGAATGATAACTTAAGCGAAGAAGAAAAAACA
ACAAATGAAACACTTAGTAAATTCCGTTCAATGCTCAATAAACTCACTGCGGAAAACTTT
GGGGTTTTAGTTGAGCAGGTCCGGACATTTAAAATTGACACGAGCGAGCGACTTGATGGG
GTGATAAATTTACTATTTGAAAAGGCAATTTCAGAACCAAAATTTGCCCCAACTTATGCA
CAGTTATGTAATGAAATTGCCAACATTCAGACAGTGTCAACTGGTACAGGTTTACAAGAT
CAAGTTCAAGATAAACAAGCAAAAAAAAATACATTAAAAGTTCGACTGATTACACAATGT
CAAAAAGAATTTGAAAGAAATAAAGAAGATACAATTAAATTTAGAGAAATTGAAGAAAAA
TTAAGAGAAAATGAATCAGAGACAGATAATGAGAAACGTGAAGAAACTAAAGCAGCTCTT
GAGGAAGAACATTATAAACTACGCCAACGTGCCAATGGAACAGTCAAATTTATTGGTGAA
CTCTTTAAAATTGACATGTTGACATCGAAAATTATGCGTACTTGTATTGAAATGTTGCTC
TATAATGAACCGACTGAAGAAAAGGTTGAAAGAGTTTGTAAACTTCTTACAACAATTGGT
GGTAAAATGGAAGCCAATGAAGGCAGACAATCTTTGTCAAAATATTTCCATCTTCTTAAT
GAAATGACACAATCCAATAATAAAGTTGTTCGTTCATCGCGTATTAAATTTGAGATTCAA
AATCTTCAAGATTTACGAAATAGCGGTTGGAAAGCTCGCCGTCAAGAAACTACACCAAAG
ACAATGGATCAATTGCAATATGAGGCCGATCAGGAGCAGCAATTGATCAATTACCATACG
AGACAAAGTGTGAAGGAAGAGCGACAGAGAGGTGGTCAAGGCTATAACAAACGTCAACAA
CCACAACAAGATAGTGATGGTTGGTCAGTACAGCAAAATTCAAAATCACGTGCTACACCA
ATTCAACTAAAAAATATTTCTCTGCCATCGATGAGTGACAGCTCTGCCAAACTCGGTCAA
GCTTCACAATTCCAAAACTTTATGATGCAAACTAATAAATTTGCAGGACTTGCAGTTGAT
GGTGAAAATGAGCCACCGCGTTTTGGTTCAGGTTCAAAGAACTCGTCAATGGAACGTGGT
AATCCAAGCTCAAGATTTTATGGCAATGGTGCTGACAATCGTTATGGTGGTCGTGGAAGT
AGCAATCAAAATAGTCGAAACTCATCACAAATTCGCTCACGTGATAATTCTGATACACGC
GGTGGACCATCAAGAAGTTTACAAGCACCACCACGTCATCAACAACAGCAACCAATGGGT
GGTGCATCAATGAGTTTTAGTGGACCAGCACCAGTTAAGAAACAATCACCAACACCAGTT
ACATTAACTGAAGAAGAAATTGAAAAATTCCTAAAAGAACTTGTCTCAATTGTCGATGCA
TATAGAGATGATAAATTGACAATTGAAGGCGTAACAGAAAAGGCAAATAAAGTTTCAATT
AATAAAGATGTATTGGAGCAAATTTACAATAAATTCCTTGATCGTAAAGATAAAGACCGC
GAAAACCTCATGCTAGTAATTGTTGAACTAATAAAGCAAAAAATGGTAATGCGCGATGAT
AACAAACAAGCATTGTTAAAAGTTATGGAATTTGCTCCTGATATTCAATGTGATGTACCA
CGTGTTTATGAATATATTGCTCAATTCATGAGCGAACTATTAATAGCAAACGTACTAACT
TTCCAAGAAGTTTACCAAATCTGCCAAGCGGAAGCGCGTAACCAAGAAAATATTTTACGT
TTCATTTTTACGGCAATTGAGAAGCGACATAGTGCAAATAAGCTTCAGCAGGTCGTTGCC
GAGAGTAACTGTGATTTAGGCCAATTTGTTAGAGATGGCAATTTTGGACGATGGTTGGAG
GAAAATAAATTCACAAATATGGTGCGGCGTGGAACACGTGGCATTGGTGATGTGATGAAA
CATTTAGAAGAAATGCTGCAACAAAAAACCAGCAATGACAATATTATGGATTACATTAAA
TCAACAAATGTTGCAAATGATCCATCTTTTATTCGTCAACTAACACTTGTTGTTATGACA
TATTGCTGCGACGAATATGCAGCTGGACAACCACAGGCCTCATACAAACTTAACAATGCA
AAATTGGAACAGCTATCATTAATTTTACAACGCTATATTGATACTGAAATAGAACGCGAG
CTTCAGTGTATTTTTGCTTTACAGCATTTTGCTTTTATCAGGGAATATCCACCAGGTCTT
CTTAATTCAATCTTTGAAGTTTTATATGACAATGACGTACTGTCTGTAGAAGCATTTGAA
AAATGGAAAAATTCAGAAGACGCTTGTGAAGGAAAAGGTGTTGCAGTTTGCAGTACACGA
CAATTCTTCACAAAACTCGCCGAAGACGAGGATGATGATGATGATACTGGAAGCTCACGA
TGGCTGGCTGGCTGGGTCAGTCATAACTCGACAACGACATTTTCAGGCTTGTTTGAACAT
CTCCAATCATCAAAGAATTCTTCTAAAGTTAAAGGATCAAAAAAACCTACGAGTCTGCCA
TTTAGAAAAAGATTTCTAAACTTCTTTGTTGCAACGGGTGTACCATATGCAGCGATAGCA
CATAAATCATTTGCTGCAATGTTTGATCATGAAAAAGTTCCATCAACTAAAACATTAAGA
GCTGATGTAGATTCAGAAAACGTACAAATGCTCATTGATATCAAAAATATATTGAAAAAA
GTAGATTTTGTATGTTTGACTGCTGATTCATGGTCTAGTTATAACAGGAATTTTATCGCT
GTTACATGTCTATTATTTGATCACAAAACTCATGACAAATTTTCTAAGAAACGTTTGCTC
TTAGCTATCAAACAAGTATCAAAATCAATTGATTTTGAGCTAATTGCGAATTTTCTTGAT
GAAACAATCAATAAATTTAATTTAAAGAATAAAGTAAGAAAGGTAATCACAGACGGAGGA
TCAAATTTCATCAAAGCTTTTAAGTAA
>g14433.t1 Gene=g14433 Length=1768
MSLRNFVPSYPQLSVNGPPPHHQTHRVQALPVSVATALQQQISQQQQQQQTQQGGSSQSN
PNGNGSGNVQASSHDAYHVAPCLQFQAPAGANIAPNFIRHMSNGAYQAHPQNPYQTQVPP
PQAQQPTNPPQSLTNSAPSQQGRLTTMAPPTAPPTPPTQQQQQQTPQTAPYAVQQGAATG
HRNAQQYPRPQQQVPRRTQQQTPQTYMYQTTAFPQSFLPQFIPSGHIRAQPMQLPHQFSS
QVYQPMATPLYFNPQAPAFQQITAPTTNGQRQTATPTTVPPTSMGPAANEYPSYNVYDMP
PVIQQPATTQPPPQKTTKKPGSFAIKIINPNTGKDIFDEDGNGAVTTSGSVSSSNSNNNI
SSSNSSINNSISSGVDDKVSSNVTEHHLHHHSGKEESVEKENAEPLTPVVSAMSDGPSVD
ITPKHQVNKVKKIKPPEQIPSQQQQQSQSLSVQNSNQSSQPSMVVPQLADPPKHIKIEAP
KQEIPEQQQQQQQQVIITSQPVQDSENNNSSTIEQVQETIETELIVSSPAPSQSTTAAVE
VNEVNDTNNNSYQTKDDEPNENEVLNEPNESDETDRAVVMEPQDTNNNNSTETDEKIAPV
DGPINYDEDQWSPANLSGKKYYTRDQLLKLKDAVMVPPIRLPDGVAGQLSKNNKEYLTNT
LTQVMPPMGMRTPYDAINSVAPKFMMNTPGNRNPYQTKRPSQQGNQQKVPGRGGSQTGPD
RQILKINLSLHDDVKLNESENAWKPTHLKKNDNLSEEEKTTNETLSKFRSMLNKLTAENF
GVLVEQVRTFKIDTSERLDGVINLLFEKAISEPKFAPTYAQLCNEIANIQTVSTGTGLQD
QVQDKQAKKNTLKVRLITQCQKEFERNKEDTIKFREIEEKLRENESETDNEKREETKAAL
EEEHYKLRQRANGTVKFIGELFKIDMLTSKIMRTCIEMLLYNEPTEEKVERVCKLLTTIG
GKMEANEGRQSLSKYFHLLNEMTQSNNKVVRSSRIKFEIQNLQDLRNSGWKARRQETTPK
TMDQLQYEADQEQQLINYHTRQSVKEERQRGGQGYNKRQQPQQDSDGWSVQQNSKSRATP
IQLKNISLPSMSDSSAKLGQASQFQNFMMQTNKFAGLAVDGENEPPRFGSGSKNSSMERG
NPSSRFYGNGADNRYGGRGSSNQNSRNSSQIRSRDNSDTRGGPSRSLQAPPRHQQQQPMG
GASMSFSGPAPVKKQSPTPVTLTEEEIEKFLKELVSIVDAYRDDKLTIEGVTEKANKVSI
NKDVLEQIYNKFLDRKDKDRENLMLVIVELIKQKMVMRDDNKQALLKVMEFAPDIQCDVP
RVYEYIAQFMSELLIANVLTFQEVYQICQAEARNQENILRFIFTAIEKRHSANKLQQVVA
ESNCDLGQFVRDGNFGRWLEENKFTNMVRRGTRGIGDVMKHLEEMLQQKTSNDNIMDYIK
STNVANDPSFIRQLTLVVMTYCCDEYAAGQPQASYKLNNAKLEQLSLILQRYIDTEIERE
LQCIFALQHFAFIREYPPGLLNSIFEVLYDNDVLSVEAFEKWKNSEDACEGKGVAVCSTR
QFFTKLAEDEDDDDDTGSSRWLAGWVSHNSTTTFSGLFEHLQSSKNSSKVKGSKKPTSLP
FRKRFLNFFVATGVPYAAIAHKSFAAMFDHEKVPSTKTLRADVDSENVQMLIDIKNILKK
VDFVCLTADSWSSYNRNFIAVTCLLFDHKTHDKFSKKRLLLAIKQVSKSIDFELIANFLD
ETINKFNLKNKVRKVITDGGSNFIKAFK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g14433.t1 | CDD | cd11559 | W2_eIF4G1_like | 1418 | 1547 | 4.74081E-31 |
| 13 | g14433.t1 | Coils | Coil | Coil | 874 | 910 | - |
| 12 | g14433.t1 | Coils | Coil | Coil | 1766 | 1768 | - |
| 10 | g14433.t1 | Gene3D | G3DSA:1.25.40.180 | - | 754 | 1011 | 5.2E-68 |
| 9 | g14433.t1 | Gene3D | G3DSA:1.25.40.180 | - | 1220 | 1413 | 8.9E-24 |
| 11 | g14433.t1 | Gene3D | G3DSA:1.25.40.180 | - | 1417 | 1568 | 1.4E-33 |
| 24 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - |
| 31 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 70 | - |
| 30 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 70 | - |
| 23 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 203 | - |
| 18 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 148 | - |
| 26 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 203 | - |
| 21 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 366 | - |
| 32 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 404 | - |
| 35 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 402 | - |
| 34 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 466 | - |
| 20 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 465 | - |
| 22 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 512 | - |
| 19 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 596 | - |
| 28 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 595 | - |
| 25 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 713 | - |
| 27 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 720 | - |
| 17 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 741 | 762 | - |
| 37 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1042 | 1088 | - |
| 29 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1054 | 1088 | - |
| 33 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1153 | 1220 | - |
| 36 | g14433.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1155 | 1220 | - |
| 4 | g14433.t1 | PANTHER | PTHR23253:SF63 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4G1, ISOFORM B-RELATED | 42 | 1573 | 2.2E-117 |
| 5 | g14433.t1 | PANTHER | PTHR23253 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 42 | 1573 | 2.2E-117 |
| 1 | g14433.t1 | Pfam | PF02854 | MIF4G domain | 767 | 1008 | 1.1E-39 |
| 2 | g14433.t1 | Pfam | PF02847 | MA3 domain | 1261 | 1339 | 1.2E-5 |
| 3 | g14433.t1 | Pfam | PF02020 | eIF4-gamma/eIF5/eIF2-epsilon | 1500 | 1575 | 8.4E-10 |
| 38 | g14433.t1 | ProSiteProfiles | PS51366 | MI domain profile. | 1222 | 1349 | 12.94 |
| 39 | g14433.t1 | ProSiteProfiles | PS51363 | W2 domain profile. | 1385 | 1576 | 15.759 |
| 15 | g14433.t1 | SMART | SM00543 | if4_15 | 765 | 1009 | 5.4E-38 |
| 16 | g14433.t1 | SMART | SM00515 | 542_3 | 1487 | 1572 | 8.4E-9 |
| 8 | g14433.t1 | SUPERFAMILY | SSF48371 | ARM repeat | 761 | 1011 | 1.87E-51 |
| 6 | g14433.t1 | SUPERFAMILY | SSF48371 | ARM repeat | 1224 | 1401 | 8.06E-17 |
| 7 | g14433.t1 | SUPERFAMILY | SSF48371 | ARM repeat | 1417 | 1542 | 4.32E-18 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003723 | RNA binding | MF |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K03260 (translation initiation factor 4G)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
