General information for g14433.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14433 is located on chr_4: 499943..502207 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14433 | g14433.t4 | TTS | g14433.t4 | 497791 | 497791 |
| chr_4 | g14433 | g14433.t4 | isoform | g14433.t4 | 497993 | 499318 |
| chr_4 | g14433 | g14433.t4 | exon | g14433.t4.exon1 | 497993 | 498268 |
| chr_4 | g14433 | g14433.t4 | cds | g14433.t4.CDS1 | 497993 | 498268 |
| chr_4 | g14433 | g14433.t4 | exon | g14433.t4.exon2 | 498331 | 499156 |
| chr_4 | g14433 | g14433.t4 | cds | g14433.t4.CDS2 | 498331 | 499156 |
| chr_4 | g14433 | g14433.t4 | exon | g14433.t4.exon3 | 499220 | 499318 |
| chr_4 | g14433 | g14433.t4 | cds | g14433.t4.CDS3 | 499220 | 499281 |
| chr_4 | g14433 | g14433.t4 | TSS | g14433.t4 | NA | NA |
Sequences
>g14433.t4 Gene=g14433 Length=1201
AGAAAATGCTGAACCACTGACTCCAGTTGTTAGCGCTATGAGCGATGGACCATCAGTGGA
TATTACGCCTAAACATCAAGTCAATAAAGTCAAGAAAATTAAACCTCCAGAACAAATTCC
ATCACAACAACAACAGCAGTCACAGTCATTGTCCGTACAGAATAGTAATCAAAGTAGTCA
GCCATCAATGGTCGTGCCACAATTAGCCGATCCACCAAAACATATTAAAATTGAAGCTCC
AAAACAGGAAATTCCAGAGCAGCAACAACAGCAGCAGCAGCAAGTAATAATAACTTCACA
GCCAGTGCAAGATAGTGAAAATAACAACAGTAGTACTATTGAACAAGTGCAAGAAACTAT
CGAAACTGAGCTAATTGTATCATCACCAGCACCGTCACAATCAACAACAGCAGCTGTTGA
AGTTAACGAAGTTAATGACACAAATAACAATAGCTATCAAACAAAGGATGATGAACCAAA
TGAAAATGAAGTTTTAAATGAACCGAATGAAAGTGATGAAACTGATCGAGCAGTTGTGAT
GGAACCACAAGATACAAATAATAACAATTCAACAGAGACTGATGAAAAAATAGCACCAGT
TGATGGACCAATTAATTATGATGAAGATCAATGGAGTCCAGCTAATTTAAGTGGCAAAAA
ATACTATACAAGAGATCAACTTTTAAAGCTTAAAGATGCAGTTATGGTGCCACCAATTCG
TCTACCCGATGGTGTTGCAGGTCAATTGTCGAAGAACAACAAAGAATATCTTACAAACAC
ATTGACACAAGTGATGCCACCTATGGGTATGCGAACACCATACGATGCCATTAATAGTGT
TGCACCCAAGTTTATGATGAACACTCCCGGTAATCGTAATCCTTATCAAACTAAAAGACC
TAGTCAACAAGGAAATCAACAAAAGGTGCCTGGTCGTGGTGGTTCACAAACTGGTCCCGA
TCGTCAAATTTTGAAGATCAATTTGAGTCTACACGATGATGTTAAGCTCAATGAATCAGA
AAATGCATGGAAACCGACACATTTGAAAAAGAATGATAACTTAAGCGAAGAAGAAAAAAC
AACAAATGAAACACTTAGTAAATTCCGTTCAATGCTCAATAAACTCACTGCGGAAAACTT
TGGGGTTTTAGTTGAGCAGGTCCGGACATTTAAAATTGACACGAGCGAGCGACTTGATGG
G
>g14433.t4 Gene=g14433 Length=388
MSDGPSVDITPKHQVNKVKKIKPPEQIPSQQQQQSQSLSVQNSNQSSQPSMVVPQLADPP
KHIKIEAPKQEIPEQQQQQQQQVIITSQPVQDSENNNSSTIEQVQETIETELIVSSPAPS
QSTTAAVEVNEVNDTNNNSYQTKDDEPNENEVLNEPNESDETDRAVVMEPQDTNNNNSTE
TDEKIAPVDGPINYDEDQWSPANLSGKKYYTRDQLLKLKDAVMVPPIRLPDGVAGQLSKN
NKEYLTNTLTQVMPPMGMRTPYDAINSVAPKFMMNTPGNRNPYQTKRPSQQGNQQKVPGR
GGSQTGPDRQILKINLSLHDDVKLNESENAWKPTHLKKNDNLSEEEKTTNETLSKFRSML
NKLTAENFGVLVEQVRTFKIDTSERLDG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g14433.t4 | Gene3D | G3DSA:1.25.40.180 | - | 342 | 388 | 2.0E-6 |
| 9 | g14433.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 107 | - |
| 10 | g14433.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 53 | - |
| 7 | g14433.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 107 | - |
| 6 | g14433.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 184 | - |
| 4 | g14433.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 183 | - |
| 3 | g14433.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 308 | - |
| 8 | g14433.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 301 | - |
| 5 | g14433.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 349 | - |
| 1 | g14433.t4 | PANTHER | PTHR23253:SF10 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1 | 22 | 388 | 2.5E-22 |
| 2 | g14433.t4 | PANTHER | PTHR23253 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 22 | 388 | 2.5E-22 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003743 | translation initiation factor activity | MF |
| GO:0003729 | mRNA binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
