General information for g14433.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14433 is located on chr_4: 499943..502207 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14433 | g14433.t6 | isoform | g14433.t6 | 499943 | 502207 |
| chr_4 | g14433 | g14433.t6 | exon | g14433.t6.exon1 | 499943 | 500210 |
| chr_4 | g14433 | g14433.t6 | cds | g14433.t6.CDS1 | 499945 | 500210 |
| chr_4 | g14433 | g14433.t6 | exon | g14433.t6.exon2 | 500405 | 500907 |
| chr_4 | g14433 | g14433.t6 | cds | g14433.t6.CDS2 | 500405 | 500711 |
| chr_4 | g14433 | g14433.t6 | exon | g14433.t6.exon3 | 502117 | 502207 |
| chr_4 | g14433 | g14433.t6 | TSS | g14433.t6 | 502219 | 502219 |
| chr_4 | g14433 | g14433.t6 | TTS | g14433.t6 | NA | NA |
Sequences
>g14433.t6 Gene=g14433 Length=862
GTTCTTTGTTATTGAATTTTGTGAAAAGGGTGAAAATATTTTTTGCGGAAATAAAATCAT
AAATAAGTGAAAAATAAAATGATCATTTTAATCACAATTTCTTTTGTTGCAATGACAAAC
CGATTTTAAATTAGTTTTTATAATAACAAATAAGAAATATACAATATAAATAAGTATCTT
AAGTTTTTTTGCGTCTATTAAAAACTATAAAAAAGTGAAAAAAAGGATAAAAAATATTCA
TTATTTAGTAATTTACCAAAAACGTTTTGAAGTAAAAAAATACAAAAATGAGTTTGAGGA
ATTTTGTACCATCGTATCCTCAATTATCGGTGAATGGACCACCACCACATCATCAGACAC
ATCGCGTTCAAGCGCTTCCTGTAAGCGTCGCAACTGCCTTACAACAGCAAATTTCACAGC
AGCAACAGCAACAGCAAACACAGCAAGGCGGATCGTCACAATCGAATCCTAATGGAAATG
GCTCAGGCAATGTACAAGCATCATCGCATGATGCATATCATGTTGCACCTTGTCTACAAT
TTCAAGCACCAGCAGGCGCAAATATAGCTCCCAATTTTATCAGACATATGTCGAACGGAG
CCTATCAAGCTCATCCACAGAATCCCTATCAGACACAAGTTCCACCACCACAGGCACAAC
AGCCAACGAATCCACCTCAGTCACTTACAAATTCGGCGCCATCACAGCAAGGTCGTTTGA
CAACAATGGCGCCACCAACAGCGCCACCAACACCACCAACACAACAGCAACAGCAGCAAA
CTCCACAAACAGCACCATATGCAGTTCAGCAAGGTGCTGCAACTGGTCATCGTAATGCTC
AACAGTATCCACGTCCACAGCA
>g14433.t6 Gene=g14433 Length=191
MSLRNFVPSYPQLSVNGPPPHHQTHRVQALPVSVATALQQQISQQQQQQQTQQGGSSQSN
PNGNGSGNVQASSHDAYHVAPCLQFQAPAGANIAPNFIRHMSNGAYQAHPQNPYQTQVPP
PQAQQPTNPPQSLTNSAPSQQGRLTTMAPPTAPPTPPTQQQQQQTPQTAPYAVQQGAATG
HRNAQQYPRPQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14433.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - |
| 6 | g14433.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 70 | - |
| 2 | g14433.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 70 | - |
| 4 | g14433.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 191 | - |
| 3 | g14433.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 148 | - |
| 1 | g14433.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 191 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
