General information for g1444.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Myrosinase 1.
Parent gene
- The parent gene g1444 is located on chr_3: 10999974..11001729 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1444 | g1444.t1 | isoform | g1444.t1 | 10999974 | 11001729 |
| chr_3 | g1444 | g1444.t1 | exon | g1444.t1.exon1 | 10999974 | 11000425 |
| chr_3 | g1444 | g1444.t1 | cds | g1444.t1.CDS1 | 10999974 | 11000425 |
| chr_3 | g1444 | g1444.t1 | exon | g1444.t1.exon2 | 11000482 | 11000698 |
| chr_3 | g1444 | g1444.t1 | cds | g1444.t1.CDS2 | 11000482 | 11000698 |
| chr_3 | g1444 | g1444.t1 | exon | g1444.t1.exon3 | 11000759 | 11001152 |
| chr_3 | g1444 | g1444.t1 | cds | g1444.t1.CDS3 | 11000759 | 11001152 |
| chr_3 | g1444 | g1444.t1 | exon | g1444.t1.exon4 | 11001204 | 11001340 |
| chr_3 | g1444 | g1444.t1 | cds | g1444.t1.CDS4 | 11001204 | 11001340 |
| chr_3 | g1444 | g1444.t1 | exon | g1444.t1.exon5 | 11001401 | 11001570 |
| chr_3 | g1444 | g1444.t1 | cds | g1444.t1.CDS5 | 11001401 | 11001570 |
| chr_3 | g1444 | g1444.t1 | exon | g1444.t1.exon6 | 11001630 | 11001729 |
| chr_3 | g1444 | g1444.t1 | cds | g1444.t1.CDS6 | 11001630 | 11001729 |
| chr_3 | g1444 | g1444.t1 | TSS | g1444.t1 | NA | NA |
| chr_3 | g1444 | g1444.t1 | TTS | g1444.t1 | NA | NA |
Sequences
>g1444.t1 Gene=g1444 Length=1470
ATGAAGACTTTAATTTTTATAACAATTTTAATAGTTACTGTCAGTAGTGAAATTAAAAGA
TATTCTTTTCCTGATGATTTCTTATTTGGTGCTGCAACAGCAAGTTATCAAATCGAAGGG
GCATGGAATGTAGATGGAAAAATTCCCAGCATTTGGGACACAGCATCACATAGAAATCCA
TCAAGTGTTGTTGATGGAACCACTGGTGATGATGCGGGAATGTCTTATTATTATTATGAA
AAAGATATTCAAGCATTAAAAGATATTGGGTTCAAAGTCTATCGATTTTCAATTGCATGG
ACACGAATGTTAACGAAAACAAATCAAGTTAATCAAAAGGGAATTGATTATTACAATAAA
CTAATTGATCGATTGAAAGAAGAAGGAATTGAACCAATGGTCACAATCTATCATTGGGAT
TTACCTCAATATCTTCAAGATTTGGGTGGTTGGACAAATCCAAGAATTGTAAAATATTTT
GAAATCTTTGCTGATCTTGCTTTCAAGTCTTTTGGTGATCGTGTAAAAGAATGGATAACT
TTTAATGAGCCAAGTGTCTTTTGTGATGAAGGTTATGGTTGGGCATCTCATGCACCTGAA
ATTCGAACTGATAAAAATATCGGAAATTATTTATGTACTCACCATGTTTTATTAGCACAT
GCATCAGCTTATCGCATGTATAAAGAAAAATATTTCCCATCACAGCAAGGCAAAGTTGGT
ATTTGTTTGAATTCAGGTTTCAATTATCCGTACAACTCAACTGTTACCCAAGAAACTGTC
GATAAAGCAGTTAATTTTTATTTAGGAAGATTTGCAAATGCAATTTTTACCGAAGAAGGT
GATTATCCAAAAATAATGCGTGATGCAATTAATGAAAAAAGTAAAAATGAAGGCAGAAGA
TGGTCAAGACTTCCTCATTTTACAACAGCTCAAATAGAAAGCTTAAAAGGATCAGCTGAT
TTTTTGGCTATAAATTATTATTCAAGTAATTTTGTTGTACCTTTTGATTTACTTCCGGGT
TGGGACCCAGCAGGAAGTGATAATGAAATTTGGGGATTTCATGATCCAACAATTTGGAAA
AGAGCTAAAAGCGTGTGGCTCTATCAGGTTCCAGATGGTTTGCGTGATTTGCTGATATGG
ATAAAAGATCACTACAACAATCCATTAGTTTATATTACTGAAAATGGTTGGTCAGATGAA
CCAATGACGATTGATGATTATGATAGAATTGAATATTTGAATCTTCATTTAAAAGCTTTA
TCTCAAGCAATTGATGCTAGCTGTAACGTAAAAGCTTACACAGTTTGGAGTTTAATTGAC
AATTTTGAATGGATGAGAGGATATACTGAAAGATTTGGAATTTATGCAATTAATTTTACT
GATCCTGAAAGACAAAGAATTCCAAAGAAATCAGTTGCACTTTTTAAAGATTTAATGCAA
AATATGTATGTTGAAATTGATGAAAATTAA
>g1444.t1 Gene=g1444 Length=489
MKTLIFITILIVTVSSEIKRYSFPDDFLFGAATASYQIEGAWNVDGKIPSIWDTASHRNP
SSVVDGTTGDDAGMSYYYYEKDIQALKDIGFKVYRFSIAWTRMLTKTNQVNQKGIDYYNK
LIDRLKEEGIEPMVTIYHWDLPQYLQDLGGWTNPRIVKYFEIFADLAFKSFGDRVKEWIT
FNEPSVFCDEGYGWASHAPEIRTDKNIGNYLCTHHVLLAHASAYRMYKEKYFPSQQGKVG
ICLNSGFNYPYNSTVTQETVDKAVNFYLGRFANAIFTEEGDYPKIMRDAINEKSKNEGRR
WSRLPHFTTAQIESLKGSADFLAINYYSSNFVVPFDLLPGWDPAGSDNEIWGFHDPTIWK
RAKSVWLYQVPDGLRDLLIWIKDHYNNPLVYITENGWSDEPMTIDDYDRIEYLNLHLKAL
SQAIDASCNVKAYTVWSLIDNFEWMRGYTERFGIYAINFTDPERQRIPKKSVALFKDLMQ
NMYVEIDEN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g1444.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 19 | 489 | 4.2E-178 |
| 2 | g1444.t1 | PANTHER | PTHR10353:SF36 | CYTOSOLIC BETA-GLUCOSIDASE | 15 | 482 | 7.2E-158 |
| 3 | g1444.t1 | PANTHER | PTHR10353 | GLYCOSYL HYDROLASE | 15 | 482 | 7.2E-158 |
| 7 | g1444.t1 | PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 318 | 332 | 7.7E-19 |
| 6 | g1444.t1 | PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 390 | 398 | 7.7E-19 |
| 8 | g1444.t1 | PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 406 | 417 | 7.7E-19 |
| 4 | g1444.t1 | PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 427 | 444 | 7.7E-19 |
| 5 | g1444.t1 | PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 451 | 463 | 7.7E-19 |
| 1 | g1444.t1 | Pfam | PF00232 | Glycosyl hydrolase family 1 | 21 | 481 | 2.5E-142 |
| 13 | g1444.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 16 | - |
| 14 | g1444.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 15 | g1444.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 12 | - |
| 16 | g1444.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 13 | 16 | - |
| 12 | g1444.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 17 | 489 | - |
| 17 | g1444.t1 | ProSitePatterns | PS00653 | Glycosyl hydrolases family 1 N-terminal signature. | 27 | 41 | - |
| 9 | g1444.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 21 | 481 | 4.81E-147 |
| 10 | g1444.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 16 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K05350 (beta-glucosidase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed