General information for g14441.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein patched.
Parent gene
- The parent gene g14441 is located on chr_4: 574945..590961 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14441 | g14441.t1 | isoform | g14441.t1 | 574945 | 590961 |
| chr_4 | g14441 | g14441.t1 | exon | g14441.t1.exon1 | 574945 | 575410 |
| chr_4 | g14441 | g14441.t1 | cds | g14441.t1.CDS1 | 574945 | 575410 |
| chr_4 | g14441 | g14441.t1 | exon | g14441.t1.exon2 | 576249 | 576284 |
| chr_4 | g14441 | g14441.t1 | cds | g14441.t1.CDS2 | 576249 | 576284 |
| chr_4 | g14441 | g14441.t1 | exon | g14441.t1.exon3 | 576413 | 576801 |
| chr_4 | g14441 | g14441.t1 | cds | g14441.t1.CDS3 | 576413 | 576801 |
| chr_4 | g14441 | g14441.t1 | exon | g14441.t1.exon4 | 590818 | 590961 |
| chr_4 | g14441 | g14441.t1 | cds | g14441.t1.CDS4 | 590818 | 590961 |
| chr_4 | g14441 | g14441.t1 | TSS | g14441.t1 | NA | NA |
| chr_4 | g14441 | g14441.t1 | TTS | g14441.t1 | NA | NA |
Sequences
>g14441.t1 Gene=g14441 Length=1035
ATGGGTTTACCAATAAACGATTCAATACCACGAGTGCCAGAGCCTCATTCAGAATTAACA
ATTGAAGATGAAAAACTTTATTCTGACCTGTATATTAGAACAAGCTGGTTTGATGCGGCC
TTGGCTTTAGATCAAATTGAGAAGGGCAAAGCAGATGGACGAAGAACGAGCATTTACCTG
CGCCATCTATTTCAATCACATTTTTTTAAAATTGGTCGAAGTATTGACAAGCATGCAGGA
ATTATTATTTTCATGGCTGCTCTTATTCTCGGCACATTTTGTGTTGGTCTTAAATCCGTC
ATAATTCACTCAAATGTAAATCAATTGTGGCTGGAAGTGGGTGGAAGTCTTGAACAAGAA
CTTGCCTATACTGACAAATACCTTGGTTACATTGATACATCAACAAACAATCAATTGCTA
ATACAAACGCTTAAAAATGAAGATGCAACGATACTTTATGACCAAGCTTTACTTTCGCAT
CTGAAAGTAGTCAAACAAGCACTTGGAGTTGAAGTTTTTATTGGTGAAGTTACCAAATTA
CTTGGACCTGACAGAGATCCTCATATACCAATGATAAATGAAAAGTATGGAACAATAAGT
TGGCAATCATTAGATCCAGCAAGATTACTTGAAGATGCCAGTAAATCTTTTCATACTGAA
GACAAATCATCGAAATCTGATCAAGGAATGATTGCAAAAGTTGAACAATATATGAAACAA
GCTGGAATAACAACTGGTTACATCAAAAAACCTTGTCTTAATCCATTTGATCCACAATGT
CCAGCATCATCACCAAATAAAAGATCAAGACAAACTCCCGACATTGGTGCAGCTTTGAGT
GGTGGTTGTTATGGTTATGCAATGAATTTCATGCATTGGCCTGAAGAATTGATTGTTGGT
GGTGCTGAAAAGAATGCAACTAATCACATTAAGAAAGCTAAGGCATTACAGACAGTCATT
CAATTGATGAGCGAGCAAGAACTTTATGATCATTGCATGATAACTATAAAACCCATTATG
CTGGATGGAGTTTAA
>g14441.t1 Gene=g14441 Length=344
MGLPINDSIPRVPEPHSELTIEDEKLYSDLYIRTSWFDAALALDQIEKGKADGRRTSIYL
RHLFQSHFFKIGRSIDKHAGIIIFMAALILGTFCVGLKSVIIHSNVNQLWLEVGGSLEQE
LAYTDKYLGYIDTSTNNQLLIQTLKNEDATILYDQALLSHLKVVKQALGVEVFIGEVTKL
LGPDRDPHIPMINEKYGTISWQSLDPARLLEDASKSFHTEDKSSKSDQGMIAKVEQYMKQ
AGITTGYIKKPCLNPFDPQCPASSPNKRSRQTPDIGAALSGGCYGYAMNFMHWPEELIVG
GAEKNATNHIKKAKALQTVIQLMSEQELYDHCMITIKPIMLDGV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g14441.t1 | PANTHER | PTHR46022:SF1 | PROTEIN PATCHED | 36 | 177 | 3.0E-81 |
| 3 | g14441.t1 | PANTHER | PTHR46022 | PROTEIN PATCHED | 36 | 177 | 3.0E-81 |
| 2 | g14441.t1 | PANTHER | PTHR46022:SF1 | PROTEIN PATCHED | 178 | 332 | 3.0E-81 |
| 4 | g14441.t1 | PANTHER | PTHR46022 | PROTEIN PATCHED | 178 | 332 | 3.0E-81 |
| 6 | g14441.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 78 | - |
| 8 | g14441.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 79 | 101 | - |
| 7 | g14441.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 102 | 344 | - |
| 5 | g14441.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 80 | 102 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
