Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14454 g14454.t1 TSS g14454.t1 672220 672220
chr_4 g14454 g14454.t1 isoform g14454.t1 672353 674592
chr_4 g14454 g14454.t1 exon g14454.t1.exon1 672353 672457
chr_4 g14454 g14454.t1 cds g14454.t1.CDS1 672353 672457
chr_4 g14454 g14454.t1 exon g14454.t1.exon2 673528 674592
chr_4 g14454 g14454.t1 cds g14454.t1.CDS2 673528 674592
chr_4 g14454 g14454.t1 TTS g14454.t1 674776 674776

Sequences

>g14454.t1 Gene=g14454 Length=1170
ATGACAACACTCACAGATTGTCGTTTTTGTCTTGAAAAGAAGCGTCATGTGCTAGAAATA
AATAATGAAATACAAAATACATTTTATTTAATTACACAAATGAAACTCAACAAATTAAAA
AACTTTTCAAATTCAATTTGTTTTGTTTGCTACAAAAAACTCTTAGCAGCACATAGCTAT
CGTGAGATGCTAGTAAAAATAGAAGAAAAGCTTCTTTGTACATTTTCAGTCAATACATTA
TCACCACTAATTCATCAGCTGCTTTCAAGTACTAGCACACCACAGCAGCATCAAGTTCAA
CAAAAACAAGCAAAAGTGATTCGTTCTTCAGAACAAAATAGAACAAATTTCAATAATGGT
TTTAAAAAGATTAAACTATCAAAGCAGCAATCAACAGATGAAGAAGAGAATGAAAATGAC
CAAGATGATGATGATGAAAATGGAGACAATACAAATTTACTTGAAGAAATTGTTTCATTC
AATGCACCTGACACATCAATGTTGATAAATGAGCAAGATCATGAGCATGACAAGCAATTT
GCATTAATGAGCGATGTTGAAATAAATGAAAGTCAAGTAAAAGAAGAACCAAGTGAAAGA
TCAGTCGTTGAAATTGATGAATCCAGCAACAGTCAAAGTCAGCCAACAATGTTGAAACCT
TACAAATGCAATTATCCTGGGTGCTTTTCAAGCTCAACCACATTGATTGCACTTAAGAAA
CATCGTAGAAGAAATCATGGCATAAGAATTCAAAGACCTAAAATAGAACAATCTTTACAA
GAAGCTAACGTGCTCTATAATCAACTTGTTCAAGCTTCACAAGGCTTCAAATGCAAATAC
TGTGATCTAAAACTTAGAAATCAGCGTGTCTTAAGCAGACATATAGAAACGGTCCACAAG
CTTGCCAAATTTTTCTGCACAATTGAAGGTTGTAATCATGCAAGTACAAGAAAAGATAAT
TATCGATTGCATTTGAAAAATTATCATCGAAATTTACCTGAAGAAGAGCTAAAAAAACAT
CTTGATCGCACAAGAGACATGAAACCAGTTTATGTTAATCAAGATTGGGAAGGAACTGAT
GGTGAAAATGACGAACAATCTTTAAATTTAAATTTAGGAAATGATAGTTGGATTCAATTG
CCAAATTTTGATAATGAAATTGGATGTTAA

>g14454.t1 Gene=g14454 Length=389
MTTLTDCRFCLEKKRHVLEINNEIQNTFYLITQMKLNKLKNFSNSICFVCYKKLLAAHSY
REMLVKIEEKLLCTFSVNTLSPLIHQLLSSTSTPQQHQVQQKQAKVIRSSEQNRTNFNNG
FKKIKLSKQQSTDEEENENDQDDDDENGDNTNLLEEIVSFNAPDTSMLINEQDHEHDKQF
ALMSDVEINESQVKEEPSERSVVEIDESSNSQSQPTMLKPYKCNYPGCFSSSTTLIALKK
HRRRNHGIRIQRPKIEQSLQEANVLYNQLVQASQGFKCKYCDLKLRNQRVLSRHIETVHK
LAKFFCTIEGCNHASTRKDNYRLHLKNYHRNLPEEELKKHLDRTRDMKPVYVNQDWEGTD
GENDEQSLNLNLGNDSWIQLPNFDNEIGC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g14454.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 218 247 2.1E-5
10 g14454.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 251 331 8.2E-7
8 g14454.t1 MobiDBLite mobidb-lite consensus disorder prediction 118 148 -
7 g14454.t1 MobiDBLite mobidb-lite consensus disorder prediction 190 215 -
6 g14454.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 278 299 -
2 g14454.t1 SMART SM00868 zf_AD_2 6 74 6.1E-4
4 g14454.t1 SMART SM00355 c2h2final6 221 246 0.058
3 g14454.t1 SMART SM00355 c2h2final6 276 299 0.045
5 g14454.t1 SMART SM00355 c2h2final6 304 329 0.095
1 g14454.t1 SUPERFAMILY SSF57716 Glucocorticoid receptor-like (DNA-binding domain) 7 71 2.99E-6

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005634 nucleus CC
GO:0008270 zinc ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values