General information for g14457.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Exocyst complex component 7.
Parent gene
- The parent gene g14457 is located on chr_4: 682653..683555 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14457 | g14457.t1 | TTS | g14457.t1 | 681236 | 681236 |
| chr_4 | g14457 | g14457.t1 | isoform | g14457.t1 | 681277 | 683555 |
| chr_4 | g14457 | g14457.t1 | exon | g14457.t1.exon1 | 681277 | 681941 |
| chr_4 | g14457 | g14457.t1 | cds | g14457.t1.CDS1 | 681277 | 681941 |
| chr_4 | g14457 | g14457.t1 | exon | g14457.t1.exon2 | 682004 | 683012 |
| chr_4 | g14457 | g14457.t1 | cds | g14457.t1.CDS2 | 682004 | 683012 |
| chr_4 | g14457 | g14457.t1 | exon | g14457.t1.exon3 | 683070 | 683351 |
| chr_4 | g14457 | g14457.t1 | cds | g14457.t1.CDS3 | 683070 | 683351 |
| chr_4 | g14457 | g14457.t1 | exon | g14457.t1.exon4 | 683403 | 683555 |
| chr_4 | g14457 | g14457.t1 | cds | g14457.t1.CDS4 | 683403 | 683555 |
| chr_4 | g14457 | g14457.t1 | TSS | g14457.t1 | 683630 | 683630 |
Sequences
>g14457.t1 Gene=g14457 Length=2109
ATGGAAGAAATAACGTCAACGCTTCAAATTGAAGCAAAACTTGAACGTGAAAGAGCAAAT
ATTGCAATGCTGGAGCAGAATATAAATAAATATAATGAACTAACAAACCAGGCTAGCAAA
ATTTTAAGAACTTTTGAAAGTCGCCTACTAAAAGTTGAAGAAAATGTTTCACCGCTCTAT
AAAGTCACGCAATCACTTGAATGTCAACAAAAAAATTTAAACCTTGTAATAAAAAAACTC
GACAGTGTCCTTGAACATTACAGTTGTAGTCAAGAGTTGGCAAATTTAATTCATCTTGGT
GTTGATAGTGAAAATATTGAGTTTTTCTTGGAAGCTTTGAATAAACTGAAAAGAGCTAAG
GAATATTTCATATCAACAAATCAAGGTAGTGTTGAGTTGCAAAATGTAACTTTGCTATTT
AATAGTGGATGTGATGCAATGAATTCTTATTTCAAACAATCTATTCGTCGTCACAGTTCT
CCAATAAAACCAATTGATTTAATCGATTTAATTTACATAGAAGACGATACTTCAACATCC
ACAAATGAAGAAATTTCAGGAAGTTCTTCAATTAGACATCTTCCACAAGATACTCGAAAA
GAATTAAAAATAATTGCTGAATGGTTAGATGAAAATCTTCGTCGTGAGTACATGTCAATT
TACAGTGATGAGAGAAGTGATATAATTTATCGCTCTCTAATAATGCTAAAAGATTATCAA
AAATCTTCAAGTCTTGGCAATGATTCTGGAATTAAAATGAAAACTTATGGAAGACTTACA
AGTAGTGATAGTGGAAAGAAAAAATTACAAAACATTTTTGAGCGTAAAGCAAATAAAGCT
TTGACAAAAGCAACAGGTGGATTGTTGAAAAAGCCTTTGAATTTGAGCAATGATAATTTT
TTAAATGATGATATGTATGGTGAAAATAATGATATGGAATTAGAAAAATATCTCGTGCTT
TTACTTGGCTTACAAAAGCTTCTTGTTGTAGAACGACAAGTTCTTAATGACATCATTCCA
CAGTCGCGCCAAAATGAAGTTTTTTCAAAAGTTGGAATGGCAAGTATTGACATGATTGTA
AAAGATGCTGAACAAATAACATCGAGAGTTATGAAAGCTATTTCTAAAAATTCTGAATGG
TCAGCTGCACTTGCAGTCTTTTCAGCTATGAAACATGTCAGTTTATTACAACCTGATATT
GAAAAAATTTGCAATCAAGAACAGAAGAATCAACTTAGTGGTGTTATGAATAAATTTCAT
TTAACTGGAAAATCTGCACTTGATCAATTCATTGAATCGATTAAAAATGAAGGAAGTGGT
CAAGTGCCATTGACAAGTTCGAGTAATTTTCCTAAAGATGCTACTGTACATCAACTAACA
TCAGATGTCGTCTGGTTTATCGAACATTTATTTCCTTATTATGAAGTAATTGGTCCTATT
TTATGTCAAGATTCAATTTATTCGCAGCCACTTCAACAAATATCAACAATGAAATCACTC
AATCAAGAAGATCAAAAGAATCGAGCACTCGTTGGAATTTACTTTCGTAAAGTTCTTACT
GAATTAAACTTCACAATTATCACAAAAGCTGATCAAATTTATAGTAATGAAGCAACTCGA
CAACTTTTTAAACTCAACAATATTTATTACATTCTTAAAAGTCTTCAACGCAATAATCTT
TTAGATGTTGTTAAATTTACTGAAGTTGATTGTGAAAAACGTTATTTAAAAATGATTGAA
GATTTAAAACAAGCTTATCAAGCGACATGGCAAAAACTTTTGATTCACATCACACCACTT
GAAGATTGTCCAAAACCCATCAATGGAAAATTGAAAGACAAAGATCGTGCAATAGTAAAA
GAAAAATTTTCAAATTTCAACAAGGAATTTGAAGATAGTGTGAAGAATCAACGAGGAATT
TCAATTCCTGATTTGTTATTGCGTGAAGGACTAAAAAGAGATAATTTAGAAATGGTTGTT
CCACATTATAATGCTTTCTATGAACTTTATGCTGACTGTGAATTTGCTAAAAATCGTGAA
AAATATGTAAAGTATACAACTCATCATTTATCAACATTGCTTAACAATTTATTTGATGAT
CGAGTATAA
>g14457.t1 Gene=g14457 Length=702
MEEITSTLQIEAKLERERANIAMLEQNINKYNELTNQASKILRTFESRLLKVEENVSPLY
KVTQSLECQQKNLNLVIKKLDSVLEHYSCSQELANLIHLGVDSENIEFFLEALNKLKRAK
EYFISTNQGSVELQNVTLLFNSGCDAMNSYFKQSIRRHSSPIKPIDLIDLIYIEDDTSTS
TNEEISGSSSIRHLPQDTRKELKIIAEWLDENLRREYMSIYSDERSDIIYRSLIMLKDYQ
KSSSLGNDSGIKMKTYGRLTSSDSGKKKLQNIFERKANKALTKATGGLLKKPLNLSNDNF
LNDDMYGENNDMELEKYLVLLLGLQKLLVVERQVLNDIIPQSRQNEVFSKVGMASIDMIV
KDAEQITSRVMKAISKNSEWSAALAVFSAMKHVSLLQPDIEKICNQEQKNQLSGVMNKFH
LTGKSALDQFIESIKNEGSGQVPLTSSSNFPKDATVHQLTSDVVWFIEHLFPYYEVIGPI
LCQDSIYSQPLQQISTMKSLNQEDQKNRALVGIYFRKVLTELNFTIITKADQIYSNEATR
QLFKLNNIYYILKSLQRNNLLDVVKFTEVDCEKRYLKMIEDLKQAYQATWQKLLIHITPL
EDCPKPINGKLKDKDRAIVKEKFSNFNKEFEDSVKNQRGISIPDLLLREGLKRDNLEMVV
PHYNAFYELYADCEFAKNREKYVKYTTHHLSTLLNNLFDDRV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14457.t1 | Coils | Coil | Coil | 7 | 34 | - |
| 5 | g14457.t1 | Gene3D | G3DSA:1.20.1280.170 | - | 81 | 253 | 1.1E-10 |
| 6 | g14457.t1 | Gene3D | G3DSA:1.20.1280.170 | - | 283 | 701 | 2.8E-99 |
| 2 | g14457.t1 | PANTHER | PTHR12542:SF7 | EXOCYST COMPLEX COMPONENT 7 | 38 | 699 | 2.1E-81 |
| 3 | g14457.t1 | PANTHER | PTHR12542 | EXOCYST COMPLEX PROTEIN EXO70 | 38 | 699 | 2.1E-81 |
| 1 | g14457.t1 | Pfam | PF03081 | Exo70 exocyst complex subunit | 323 | 695 | 6.0E-76 |
| 4 | g14457.t1 | SUPERFAMILY | SSF74788 | Cullin repeat-like | 82 | 699 | 7.32E-95 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000145 | exocyst | CC |
| GO:0006887 | exocytosis | BP |
KEGG
Orthology
- This transcript has been annotated with K07195 (exocyst complex component 7)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
