General information for g14457.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Exocyst complex component 7.
Parent gene
- The parent gene g14457 is located on chr_4: 682653..683555 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14457 | g14457.t2 | TTS | g14457.t2 | 681236 | 681236 |
| chr_4 | g14457 | g14457.t2 | isoform | g14457.t2 | 681277 | 682653 |
| chr_4 | g14457 | g14457.t2 | exon | g14457.t2.exon1 | 681277 | 681941 |
| chr_4 | g14457 | g14457.t2 | cds | g14457.t2.CDS1 | 681277 | 681941 |
| chr_4 | g14457 | g14457.t2 | exon | g14457.t2.exon2 | 682004 | 682653 |
| chr_4 | g14457 | g14457.t2 | cds | g14457.t2.CDS2 | 682004 | 682535 |
| chr_4 | g14457 | g14457.t2 | TSS | g14457.t2 | 683630 | 683630 |
Sequences
>g14457.t2 Gene=g14457 Length=1315
AAAGAAAAAATTACAAAACATTTTTGAGCGTAAAGCAAATAAAGCTTTGACAAAAGCAAC
AGGTGGATTGTTGAAAAAGCCTTTGAATTTGAGCAATGATAATTTTTTAAATGATGATAT
GTATGGTGAAAATAATGATATGGAATTAGAAAAATATCTCGTGCTTTTACTTGGCTTACA
AAAGCTTCTTGTTGTAGAACGACAAGTTCTTAATGACATCATTCCACAGTCGCGCCAAAA
TGAAGTTTTTTCAAAAGTTGGAATGGCAAGTATTGACATGATTGTAAAAGATGCTGAACA
AATAACATCGAGAGTTATGAAAGCTATTTCTAAAAATTCTGAATGGTCAGCTGCACTTGC
AGTCTTTTCAGCTATGAAACATGTCAGTTTATTACAACCTGATATTGAAAAAATTTGCAA
TCAAGAACAGAAGAATCAACTTAGTGGTGTTATGAATAAATTTCATTTAACTGGAAAATC
TGCACTTGATCAATTCATTGAATCGATTAAAAATGAAGGAAGTGGTCAAGTGCCATTGAC
AAGTTCGAGTAATTTTCCTAAAGATGCTACTGTACATCAACTAACATCAGATGTCGTCTG
GTTTATCGAACATTTATTTCCTTATTATGAAGTAATTGGTCCTATTTTATGTCAAGATTC
AATTTATTCGCAGCCACTTCAACAAATATCAACAATGAAATCACTCAATCAAGAAGATCA
AAAGAATCGAGCACTCGTTGGAATTTACTTTCGTAAAGTTCTTACTGAATTAAACTTCAC
AATTATCACAAAAGCTGATCAAATTTATAGTAATGAAGCAACTCGACAACTTTTTAAACT
CAACAATATTTATTACATTCTTAAAAGTCTTCAACGCAATAATCTTTTAGATGTTGTTAA
ATTTACTGAAGTTGATTGTGAAAAACGTTATTTAAAAATGATTGAAGATTTAAAACAAGC
TTATCAAGCGACATGGCAAAAACTTTTGATTCACATCACACCACTTGAAGATTGTCCAAA
ACCCATCAATGGAAAATTGAAAGACAAAGATCGTGCAATAGTAAAAGAAAAATTTTCAAA
TTTCAACAAGGAATTTGAAGATAGTGTGAAGAATCAACGAGGAATTTCAATTCCTGATTT
GTTATTGCGTGAAGGACTAAAAAGAGATAATTTAGAAATGGTTGTTCCACATTATAATGC
TTTCTATGAACTTTATGCTGACTGTGAATTTGCTAAAAATCGTGAAAAATATGTAAAGTA
TACAACTCATCATTTATCAACATTGCTTAACAATTTATTTGATGATCGAGTATAA
>g14457.t2 Gene=g14457 Length=398
MYGENNDMELEKYLVLLLGLQKLLVVERQVLNDIIPQSRQNEVFSKVGMASIDMIVKDAE
QITSRVMKAISKNSEWSAALAVFSAMKHVSLLQPDIEKICNQEQKNQLSGVMNKFHLTGK
SALDQFIESIKNEGSGQVPLTSSSNFPKDATVHQLTSDVVWFIEHLFPYYEVIGPILCQD
SIYSQPLQQISTMKSLNQEDQKNRALVGIYFRKVLTELNFTIITKADQIYSNEATRQLFK
LNNIYYILKSLQRNNLLDVVKFTEVDCEKRYLKMIEDLKQAYQATWQKLLIHITPLEDCP
KPINGKLKDKDRAIVKEKFSNFNKEFEDSVKNQRGISIPDLLLREGLKRDNLEMVVPHYN
AFYELYADCEFAKNREKYVKYTTHHLSTLLNNLFDDRV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14457.t2 | Gene3D | G3DSA:1.20.1280.170 | - | 1 | 397 | 0 |
| 2 | g14457.t2 | PANTHER | PTHR12542:SF7 | EXOCYST COMPLEX COMPONENT 7 | 10 | 395 | 0 |
| 3 | g14457.t2 | PANTHER | PTHR12542 | EXOCYST COMPLEX PROTEIN EXO70 | 10 | 395 | 0 |
| 1 | g14457.t2 | Pfam | PF03081 | Exo70 exocyst complex subunit | 19 | 391 | 0 |
| 4 | g14457.t2 | SUPERFAMILY | SSF74788 | Cullin repeat-like | 9 | 395 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000145 | exocyst | CC |
| GO:0006887 | exocytosis | BP |
KEGG
Orthology
- This transcript has been annotated with K07195 (exocyst complex component 7)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
