General information for g14457.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Exocyst complex component 7.
Parent gene
- The parent gene g14457 is located on chr_4: 682653..683555 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14457 | g14457.t3 | TTS | g14457.t3 | 681236 | 681236 |
| chr_4 | g14457 | g14457.t3 | isoform | g14457.t3 | 682013 | 683555 |
| chr_4 | g14457 | g14457.t3 | exon | g14457.t3.exon1 | 682013 | 683351 |
| chr_4 | g14457 | g14457.t3 | cds | g14457.t3.CDS1 | 682014 | 683009 |
| chr_4 | g14457 | g14457.t3 | exon | g14457.t3.exon2 | 683403 | 683555 |
| chr_4 | g14457 | g14457.t3 | TSS | g14457.t3 | 683630 | 683630 |
Sequences
>g14457.t3 Gene=g14457 Length=1492
ATGGAAGAAATAACGTCAACGCTTCAAATTGAAGCAAAACTTGAACGTGAAAGAGCAAAT
ATTGCAATGCTGGAGCAGAATATAAATAAATATAATGAACTAACAAACCAGGCTAGCAAA
ATTTTAAGAACTTTTGAAAGTCGCCTACTAAAAGTTGAAGAAAATGTTTCACCGCTCTAT
AAAGTCACGCAATCACTTGAATGTCAACAAAAAAATTTAAACCTTGTAATAAAAAAACTC
GACAGTGTCCTTGAACATTACAGTTGTAGTCAAGAGTTGGCAAATTTAATTCATCTTGGT
GTTGATAGTGAAAATATTGAGTTTTTCTTGGAAGCTTTGAATAAACTGAAAAGAGCTAAG
GAATATTTCATATCAACAAATCAAGGTAGTGTTGAGTTGCAAAATGTAACTTTGCTATTT
AATAGTGGATGTGATGTAAGTTATATCAGTGATAATTATTAAGATGTATTTTAATAATTT
TTTCATTTCTAGGCAATGAATTCTTATTTCAAACAATCTATTCGTCGTCACAGTTCTCCA
ATAAAACCAATTGATTTAATCGATTTAATTTACATAGAAGACGATACTTCAACATCCACA
AATGAAGAAATTTCAGGAAGTTCTTCAATTAGACATCTTCCACAAGATACTCGAAAAGAA
TTAAAAATAATTGCTGAATGGTTAGATGAAAATCTTCGTCGTGAGTACATGTCAATTTAC
AGTGATGAGAGAAGTGATATAATTTATCGCTCTCTAATAATGCTAAAAGATTATCAAAAA
TCTTCAAGTCTTGGCAATGATTCTGGAATTAAAATGAAAACTTATGGAAGACTTACAAGT
AGTGATAGTGGAAAGAAAAAATTACAAAACATTTTTGAGCGTAAAGCAAATAAAGCTTTG
ACAAAAGCAACAGGTGGATTGTTGAAAAAGCCTTTGAATTTGAGCAATGATAATTTTTTA
AATGATGATATGTATGGTGAAAATAATGATATGGAATTAGAAAAATATCTCGTGCTTTTA
CTTGGCTTACAAAAGCTTCTTGTTGTAGAACGACAAGTTCTTAATGACATCATTCCACAG
TCGCGCCAAAATGAAGTTTTTTCAAAAGTTGGAATGGCAAGTATTGACATGATTGTAAAA
GATGCTGAACAAATAACATCGAGAGTTATGAAAGCTATTTCTAAAAATTCTGAATGGTCA
GCTGCACTTGCAGTCTTTTCAGCTATGAAACATGTCAGTTTATTACAACCTGATATTGAA
AAAATTTGCAATCAAGAACAGAAGAATCAACTTAGTGGTGTTATGAATAAATTTCATTTA
ACTGGAAAATCTGCACTTGATCAATTCATTGAATCGATTAAAAATGAAGGAAGTGGTCAA
GTGCCATTGACAAGTTCGAGTAATTTTCCTAAAGATGCTACTGTACATCAACTAACATCA
GATGTCGTCTGGTTTATCGAACATTTATTTCCTTATTATGAAGTAATTGGTC
>g14457.t3 Gene=g14457 Length=332
MNSYFKQSIRRHSSPIKPIDLIDLIYIEDDTSTSTNEEISGSSSIRHLPQDTRKELKIIA
EWLDENLRREYMSIYSDERSDIIYRSLIMLKDYQKSSSLGNDSGIKMKTYGRLTSSDSGK
KKLQNIFERKANKALTKATGGLLKKPLNLSNDNFLNDDMYGENNDMELEKYLVLLLGLQK
LLVVERQVLNDIIPQSRQNEVFSKVGMASIDMIVKDAEQITSRVMKAISKNSEWSAALAV
FSAMKHVSLLQPDIEKICNQEQKNQLSGVMNKFHLTGKSALDQFIESIKNEGSGQVPLTS
SSNFPKDATVHQLTSDVVWFIEHLFPYYEVIG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g14457.t3 | Gene3D | G3DSA:1.20.1280.170 | - | 1 | 145 | 0 |
| 5 | g14457.t3 | Gene3D | G3DSA:1.20.1280.170 | - | 146 | 332 | 0 |
| 2 | g14457.t3 | PANTHER | PTHR12542:SF7 | EXOCYST COMPLEX COMPONENT 7 | 2 | 329 | 0 |
| 3 | g14457.t3 | PANTHER | PTHR12542 | EXOCYST COMPLEX PROTEIN EXO70 | 2 | 329 | 0 |
| 1 | g14457.t3 | Pfam | PF03081 | Exo70 exocyst complex subunit | 177 | 330 | 0 |
| 4 | g14457.t3 | SUPERFAMILY | SSF74788 | Cullin repeat-like | 3 | 331 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000145 | exocyst | CC |
| GO:0006887 | exocytosis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
