General information for g14457.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Exocyst complex component 7.
Parent gene
- The parent gene g14457 is located on chr_4: 682653..683555 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14457 | g14457.t4 | isoform | g14457.t4 | 682653 | 683555 |
| chr_4 | g14457 | g14457.t4 | exon | g14457.t4.exon1 | 682653 | 683012 |
| chr_4 | g14457 | g14457.t4 | cds | g14457.t4.CDS1 | 682653 | 683012 |
| chr_4 | g14457 | g14457.t4 | exon | g14457.t4.exon2 | 683070 | 683351 |
| chr_4 | g14457 | g14457.t4 | cds | g14457.t4.CDS2 | 683070 | 683351 |
| chr_4 | g14457 | g14457.t4 | exon | g14457.t4.exon3 | 683403 | 683555 |
| chr_4 | g14457 | g14457.t4 | cds | g14457.t4.CDS3 | 683403 | 683555 |
| chr_4 | g14457 | g14457.t4 | TSS | g14457.t4 | 683630 | 683630 |
| chr_4 | g14457 | g14457.t4 | TTS | g14457.t4 | NA | NA |
Sequences
>g14457.t4 Gene=g14457 Length=795
ATGGAAGAAATAACGTCAACGCTTCAAATTGAAGCAAAACTTGAACGTGAAAGAGCAAAT
ATTGCAATGCTGGAGCAGAATATAAATAAATATAATGAACTAACAAACCAGGCTAGCAAA
ATTTTAAGAACTTTTGAAAGTCGCCTACTAAAAGTTGAAGAAAATGTTTCACCGCTCTAT
AAAGTCACGCAATCACTTGAATGTCAACAAAAAAATTTAAACCTTGTAATAAAAAAACTC
GACAGTGTCCTTGAACATTACAGTTGTAGTCAAGAGTTGGCAAATTTAATTCATCTTGGT
GTTGATAGTGAAAATATTGAGTTTTTCTTGGAAGCTTTGAATAAACTGAAAAGAGCTAAG
GAATATTTCATATCAACAAATCAAGGTAGTGTTGAGTTGCAAAATGTAACTTTGCTATTT
AATAGTGGATGTGATGCAATGAATTCTTATTTCAAACAATCTATTCGTCGTCACAGTTCT
CCAATAAAACCAATTGATTTAATCGATTTAATTTACATAGAAGACGATACTTCAACATCC
ACAAATGAAGAAATTTCAGGAAGTTCTTCAATTAGACATCTTCCACAAGATACTCGAAAA
GAATTAAAAATAATTGCTGAATGGTTAGATGAAAATCTTCGTCGTGAGTACATGTCAATT
TACAGTGATGAGAGAAGTGATATAATTTATCGCTCTCTAATAATGCTAAAAGATTATCAA
AAATCTTCAAGTCTTGGCAATGATTCTGGAATTAAAATGAAAACTTATGGAAGACTTACA
AGTAGTGATAGTGGA
>g14457.t4 Gene=g14457 Length=265
MEEITSTLQIEAKLERERANIAMLEQNINKYNELTNQASKILRTFESRLLKVEENVSPLY
KVTQSLECQQKNLNLVIKKLDSVLEHYSCSQELANLIHLGVDSENIEFFLEALNKLKRAK
EYFISTNQGSVELQNVTLLFNSGCDAMNSYFKQSIRRHSSPIKPIDLIDLIYIEDDTSTS
TNEEISGSSSIRHLPQDTRKELKIIAEWLDENLRREYMSIYSDERSDIIYRSLIMLKDYQ
KSSSLGNDSGIKMKTYGRLTSSDSG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14457.t4 | Coils | Coil | Coil | 7 | 34 | - |
| 4 | g14457.t4 | Gene3D | G3DSA:1.20.1280.170 | - | 79 | 262 | 3.5E-33 |
| 1 | g14457.t4 | PANTHER | PTHR12542:SF7 | EXOCYST COMPLEX COMPONENT 7 | 38 | 236 | 8.6E-14 |
| 2 | g14457.t4 | PANTHER | PTHR12542 | EXOCYST COMPLEX PROTEIN EXO70 | 38 | 236 | 8.6E-14 |
| 3 | g14457.t4 | SUPERFAMILY | SSF74788 | Cullin repeat-like | 82 | 246 | 1.41E-22 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000145 | exocyst | CC |
| GO:0006887 | exocytosis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
