Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Zinc finger protein 26.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14465 g14465.t1 isoform g14465.t1 708578 709666
chr_4 g14465 g14465.t1 exon g14465.t1.exon1 708578 709489
chr_4 g14465 g14465.t1 cds g14465.t1.CDS1 708578 709489
chr_4 g14465 g14465.t1 exon g14465.t1.exon2 709547 709666
chr_4 g14465 g14465.t1 cds g14465.t1.CDS2 709547 709666
chr_4 g14465 g14465.t1 TSS g14465.t1 709748 709748
chr_4 g14465 g14465.t1 TTS g14465.t1 NA NA

Sequences

>g14465.t1 Gene=g14465 Length=1032
ATGGAAAAAGTGATAGTTGAAACTCTTGAATATTGCAGAATTTGTTTAAGAAAAGTTCCT
CGATTAGTTGCAATTAACAAAGAAATTCAAGAAAATTTTTTATCTATTACACAAATTAAA
CTCATAGAATCACCAAATTATTCAAACCTTATCTGCACACTTTGTGAAAGAAAATTAAAA
AATGCAAAAAATTTCCGTTCTGAATTGATTGAAAATGAAACAAATTTAAGAAACGAACTG
GAAAATTTCAGTGTTGATCATCAAAAAAAAGAATTTTACCAAGAAAATGAAACAAATTTA
GAAACCACACAAAGCTTTACTCTAGAAATTGAAAAAATTTCTCCATATTCAAAAATTAAA
CCAAAAAAATTTAAAAGTTTCCTAAACAAAAAAATAATTTGTGAATACTGCAGTAAACTA
GTGATTAAAAATTACTATCAAAGTCACATTCAAAGGCTTCACTTGGGAATAAAGAATTTC
ACCTGTGATTGTTGTGGTAAAAGTTTCTTCAAAAAATCATCATTAGCGTCTCATATGCAT
CTTCATCTTAATTCAAGACCTTTCAAATGTTCACATGATGGCTGTGAAAAAAGTTTTCTA
AGTTCAACAGCTCTTGGAACTCACATTCGATTTCATCATACAACTTTTAATGAGTATGTT
TGTAAGACTTGCCTAAAAGGTTACAAACAGAAGCGATTATTGGAAGAACATATAAGATCA
AAACATACAGGTCAAAGAATTTTTAAATGCAGTTTTGATGGCTGTGAAAGTGCTTATTTT
TCAATGAGTGCAGTTAGGAAACATTTAAAAAGTCATGAATTCGAAAACGTTACTTGTGAG
ATGTGTGGAAAAATTTATAAAAATTTAAGCAGTTTAAATGCACATGTGAGACTATCACAT
TCGAAAATTGAATTTAAATGTGAAATCGAAAAGTGTGAAAAAATATTTAAAAGTAAATGT
TTTTTGAAGAATCATTTAAAAAGTCATGAAAGAATTAAAGTTAAGAATAATTGGATTAAC
ATTCAAATTTAG

>g14465.t1 Gene=g14465 Length=343
MEKVIVETLEYCRICLRKVPRLVAINKEIQENFLSITQIKLIESPNYSNLICTLCERKLK
NAKNFRSELIENETNLRNELENFSVDHQKKEFYQENETNLETTQSFTLEIEKISPYSKIK
PKKFKSFLNKKIICEYCSKLVIKNYYQSHIQRLHLGIKNFTCDCCGKSFFKKSSLASHMH
LHLNSRPFKCSHDGCEKSFLSSTALGTHIRFHHTTFNEYVCKTCLKGYKQKRLLEEHIRS
KHTGQRIFKCSFDGCESAYFSMSAVRKHLKSHEFENVTCEMCGKIYKNLSSLNAHVRLSH
SKIEFKCEIEKCEKIFKSKCFLKNHLKSHERIKVKNNWINIQI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
30 g14465.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 86 183 4.1E-9
27 g14465.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 184 214 4.5E-8
29 g14465.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 215 274 1.2E-8
28 g14465.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 275 336 2.5E-9
5 g14465.t1 PANTHER PTHR24388 ZINC FINGER PROTEIN 20 273 2.9E-39
7 g14465.t1 PANTHER PTHR24388:SF79 IP14660P-RELATED 20 273 2.9E-39
4 g14465.t1 PANTHER PTHR24388 ZINC FINGER PROTEIN 234 331 2.9E-39
6 g14465.t1 PANTHER PTHR24388:SF79 IP14660P-RELATED 234 331 2.9E-39
1 g14465.t1 Pfam PF07776 Zinc-finger associated domain (zf-AD) 11 78 7.2E-7
2 g14465.t1 Pfam PF00096 Zinc finger, C2H2 type 219 242 0.0016
3 g14465.t1 Pfam PF00096 Zinc finger, C2H2 type 278 300 3.6E-4
22 g14465.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 162 182 -
26 g14465.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 190 213 -
24 g14465.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 221 242 -
25 g14465.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 250 272 -
21 g14465.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 279 300 -
23 g14465.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 307 329 -
36 g14465.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 160 187 14.212
32 g14465.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 188 218 10.575
33 g14465.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 219 247 11.946
34 g14465.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 248 277 8.954
35 g14465.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 277 301 10.118
31 g14465.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 305 334 10.575
13 g14465.t1 SMART SM00868 zf_AD_2 11 79 1.8E-5
16 g14465.t1 SMART SM00355 c2h2final6 132 154 55.0
18 g14465.t1 SMART SM00355 c2h2final6 160 182 0.11
20 g14465.t1 SMART SM00355 c2h2final6 188 213 0.038
19 g14465.t1 SMART SM00355 c2h2final6 219 242 0.037
17 g14465.t1 SMART SM00355 c2h2final6 248 272 0.036
14 g14465.t1 SMART SM00355 c2h2final6 277 300 0.01
15 g14465.t1 SMART SM00355 c2h2final6 305 329 0.05
8 g14465.t1 SUPERFAMILY SSF57716 Glucocorticoid receptor-like (DNA-binding domain) 10 78 2.14E-6
9 g14465.t1 SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 131 182 2.76E-8
12 g14465.t1 SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 168 226 4.57E-12
10 g14465.t1 SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 228 286 3.28E-8
11 g14465.t1 SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 278 329 2.55E-8

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005634 nucleus CC
GO:0008270 zinc ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values