Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative dTTP/UTP pyrophosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g145 g145.t18 TTS g145.t18 1335069 1335069
chr_3 g145 g145.t18 isoform g145.t18 1335186 1336668
chr_3 g145 g145.t18 exon g145.t18.exon1 1335186 1335728
chr_3 g145 g145.t18 cds g145.t18.CDS1 1335186 1335728
chr_3 g145 g145.t18 exon g145.t18.exon2 1335782 1335880
chr_3 g145 g145.t18 cds g145.t18.CDS2 1335782 1335880
chr_3 g145 g145.t18 exon g145.t18.exon3 1335956 1336094
chr_3 g145 g145.t18 cds g145.t18.CDS3 1335956 1336009
chr_3 g145 g145.t18 exon g145.t18.exon4 1336505 1336668
chr_3 g145 g145.t18 TSS g145.t18 NA NA

Sequences

>g145.t18 Gene=g145 Length=945
GAATCAGTCATTCTCGTAATTGGAATTTTCCGTATGGACAACATTCTATGAAACACGCAG
TAATTGAAAAAAAGTGGGAAGCGTTGTTTTTAGCTCTACGTATATTACGCACTCTACAAA
CAACAATTTTTAGCGCATTTTGTATCATATTAGGAAATTTTATTAATGCGCTCTTAACAC
GTCGCTGATGATTAATACTACTGACTTTTCTTCACTGCAATGTTTTCACAATGAATGTTT
TAATATAAAATGTTGAATGTTTTCAAAACGTTCAAAAAGTATTCAAATATTGCGACAAGT
CAGGACAAAATAATGTTGGCTCCTTTACAAGATCAATTAAAAAATGTACGCTTCATTCTT
GCAAGTGGCAGTCCTAGACGTCAGGAATATATTAAAAACTTGGGAATTGAAGCTGAATTA
TGTTCATCGGAATTTGATGAGAGAACTATCAAGCCAAAAGATTACAAGTCATATGACGAA
TTTGTAATAGCAATTGCAAATGGAAAAGCAGAAGAAGTTGAAAAAAGATTACAAAATGAA
TTAAAAGACACACAATATTGTATAATTGGAGCTGATACAATTAATGTATTGAATGATAAA
ATTTTCGGAAAACCAAAGGATGAAGATGAAGCATTTCGAATGTTAAAAGAATTGAATGGT
CAGCCACATTTTGTGTACACTGGATGTGTGCTTAAATTTAACGATAAAGTTGTGAAATTT
TGTGAGAGCACAAAAGTATTTTTTGGAAAATTAACAGAAGAGCAAATTAAGGCATACATT
GACTCTAGAGAACCTCTTGATAAATGTGGAGCTTATGGCACAGAAGATCTTGGTTCTTGT
ATGGTTGAAAGAATTGAGGGAGATTATTTTGCAAATGTCGGGATTCCTCTCTATCGTATA
AGTGTAGAACTCTGTAAAGCATTTAATTACGATACAAACAAATAA

>g145.t18 Gene=g145 Length=231
MLNVFKTFKKYSNIATSQDKIMLAPLQDQLKNVRFILASGSPRRQEYIKNLGIEAELCSS
EFDERTIKPKDYKSYDEFVIAIANGKAEEVEKRLQNELKDTQYCIIGADTINVLNDKIFG
KPKDEDEAFRMLKELNGQPHFVYTGCVLKFNDKVVKFCESTKVFFGKLTEEQIKAYIDSR
EPLDKCGAYGTEDLGSCMVERIEGDYFANVGIPLYRISVELCKAFNYDTNK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g145.t18 CDD cd00555 Maf 35 221 2.61619E-75
7 g145.t18 Coils Coil Coil 80 100 -
6 g145.t18 Gene3D G3DSA:3.90.950.10 - 30 226 1.9E-59
4 g145.t18 Hamap MF_00528 dTTP/UTP pyrophosphatase. 34 226 25.329342
2 g145.t18 PANTHER PTHR43213 BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED 23 225 3.9E-54
3 g145.t18 PANTHER PTHR43213:SF5 BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED 23 225 3.9E-54
8 g145.t18 PIRSF PIRSF006305 Maf 26 230 3.4E-55
1 g145.t18 Pfam PF02545 Maf-like protein 34 223 9.3E-53
5 g145.t18 SUPERFAMILY SSF52972 ITPase-like 31 221 5.69E-52
10 g145.t18 TIGRFAM TIGR00172 maf: septum formation protein Maf 34 217 3.0E-47

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0047429 nucleoside-triphosphate diphosphatase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed