Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative dTTP/UTP pyrophosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g145 g145.t19 TTS g145.t19 1335069 1335069
chr_3 g145 g145.t19 isoform g145.t19 1335186 1336764
chr_3 g145 g145.t19 exon g145.t19.exon1 1335186 1335728
chr_3 g145 g145.t19 cds g145.t19.CDS1 1335186 1335728
chr_3 g145 g145.t19 exon g145.t19.exon2 1335782 1336094
chr_3 g145 g145.t19 cds g145.t19.CDS2 1335782 1335871
chr_3 g145 g145.t19 exon g145.t19.exon3 1336710 1336764
chr_3 g145 g145.t19 TSS g145.t19 NA NA

Sequences

>g145.t19 Gene=g145 Length=911
AATTTTTAAACCATAGTCATACATAAAAATATTGAAAACAGTTGGTCAAAAAAGTAATGC
GCTCTTAACACGTCGCTGATGATTAATACTACTGACTTTTCTTCACTGCAATGTTTTCAC
AATGAATGTTTTAATATAAAATGTTGAATGTTTTCAAAACGTTCAAAAAGTATTCAAATA
TTGCGACAAGTCAGGTAATTCTGTCAGTTTAGCCAAATTTTTCCGTAGTGTTACAACTTA
AAAAATATTGTGAAATATAAAAAATTAAGGACAAAATAATGTTGGCTCCTTTACAAGATC
AATTAAAAAATGTACGCTTCATTCTTGCAAGTGGCAGTCCTAGACGTCAGGAATATATTA
AAAACTTGGGAATTGAAGCTGAATTATGTTCATCGGAATTTGATGAGAGAACTATCAAGC
CAAAAGATTACAAGTCATATGACGAATTTGTAATAGCAATTGCAAATGGAAAAGCAGAAG
AAGTTGAAAAAAGATTACAAAATGAATTAAAAGACACACAATATTGTATAATTGGAGCTG
ATACAATTAATGTATTGAATGATAAAATTTTCGGAAAACCAAAGGATGAAGATGAAGCAT
TTCGAATGTTAAAAGAATTGAATGGTCAGCCACATTTTGTGTACACTGGATGTGTGCTTA
AATTTAACGATAAAGTTGTGAAATTTTGTGAGAGCACAAAAGTATTTTTTGGAAAATTAA
CAGAAGAGCAAATTAAGGCATACATTGACTCTAGAGAACCTCTTGATAAATGTGGAGCTT
ATGGCACAGAAGATCTTGGTTCTTGTATGGTTGAAAGAATTGAGGGAGATTATTTTGCAA
ATGTCGGGATTCCTCTCTATCGTATAAGTGTAGAACTCTGTAAAGCATTTAATTACGATA
CAAACAAATAA

>g145.t19 Gene=g145 Length=210
MLAPLQDQLKNVRFILASGSPRRQEYIKNLGIEAELCSSEFDERTIKPKDYKSYDEFVIA
IANGKAEEVEKRLQNELKDTQYCIIGADTINVLNDKIFGKPKDEDEAFRMLKELNGQPHF
VYTGCVLKFNDKVVKFCESTKVFFGKLTEEQIKAYIDSREPLDKCGAYGTEDLGSCMVER
IEGDYFANVGIPLYRISVELCKAFNYDTNK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g145.t19 CDD cd00555 Maf 14 200 1.20461E-75
7 g145.t19 Coils Coil Coil 59 79 -
6 g145.t19 Gene3D G3DSA:3.90.950.10 - 9 205 1.4E-59
4 g145.t19 Hamap MF_00528 dTTP/UTP pyrophosphatase. 13 205 25.329342
2 g145.t19 PANTHER PTHR43213 BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED 2 204 3.2E-54
3 g145.t19 PANTHER PTHR43213:SF5 BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED 2 204 3.2E-54
8 g145.t19 PIRSF PIRSF006305 Maf 5 209 2.4E-55
1 g145.t19 Pfam PF02545 Maf-like protein 13 202 6.6E-53
5 g145.t19 SUPERFAMILY SSF52972 ITPase-like 10 200 4.05E-52
10 g145.t19 TIGRFAM TIGR00172 maf: septum formation protein Maf 13 196 2.1E-47

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0047429 nucleoside-triphosphate diphosphatase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values