General information for g1451.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase D6.
Parent gene
- The parent gene g1451 is located on chr_3: 11016647..11018505 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1451 | g1451.t1 | TTS | g1451.t1 | 11016552 | 11016552 |
| chr_3 | g1451 | g1451.t1 | isoform | g1451.t1 | 11016647 | 11017409 |
| chr_3 | g1451 | g1451.t1 | exon | g1451.t1.exon1 | 11016647 | 11017210 |
| chr_3 | g1451 | g1451.t1 | cds | g1451.t1.CDS1 | 11016647 | 11017210 |
| chr_3 | g1451 | g1451.t1 | exon | g1451.t1.exon2 | 11017275 | 11017409 |
| chr_3 | g1451 | g1451.t1 | cds | g1451.t1.CDS2 | 11017275 | 11017409 |
| chr_3 | g1451 | g1451.t1 | TSS | g1451.t1 | NA | NA |
Sequences
>g1451.t1 Gene=g1451 Length=699
ATGAAACTTTATGTTGTTAATGATGGACCTCCATCACTCGCATGTCGAATGACATTGAAA
TATCTTAACGTTCCATTCGAATCAATCGATGTGAATTTTAATGTTGGCGAACATTTGACC
GATGAGTATGCAAAGTTGAATCCACAAAAAGAAATTCCAGTTTTGGACGATAATGGATTC
CTATTGAGTGAGCACATTGCAATTATGCAATACATTTGCGACAAATACGCTCCTGATACG
CCAGCTTATCCAAAAGATCCTCAATTGCGTGCTCTTGTCAATCATCGTCTTTGCTTTAAT
ATGGCACACTTTTATAATGCTGTCGCTCCCTATACTCTTGCACCAATTTTCTTCGAATAT
CCTCGAAATTCTATGGGTTTAAAACGAGTGCATATGGCTCTCGAAGTTTTTGAGGAATAT
TTAAAACGAGTTGGTAAAAAATATGTTGTTGCTGATCATGTTACAATTGCTGATTTTGCA
TTGATTTCTTCAATGGTTTGCTTGGAAGGAATTGCATTTCCTTTTGATAAATTTACACGT
GTTAAAACATGGTATGAAACATTCAAAAATGAAAACCCGGAAGTTTGGTCTATTGCTGAT
GGTGTTTTGAAAATCATTCAAGATTTGGAGAAAAATCCACCTGATCTCAGTAAATTAAAT
CATCCAATCCATCCAGTCAGAAAAACAGCAAAAAAATAA
>g1451.t1 Gene=g1451 Length=232
MKLYVVNDGPPSLACRMTLKYLNVPFESIDVNFNVGEHLTDEYAKLNPQKEIPVLDDNGF
LLSEHIAIMQYICDKYAPDTPAYPKDPQLRALVNHRLCFNMAHFYNAVAPYTLAPIFFEY
PRNSMGLKRVHMALEVFEEYLKRVGKKYVVADHVTIADFALISSMVCLEGIAFPFDKFTR
VKTWYETFKNENPEVWSIADGVLKIIQDLEKNPPDLSKLNHPIHPVRKTAKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g1451.t1 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 77 | 0.000 |
| 7 | g1451.t1 | Gene3D | G3DSA:1.20.1050.10 | - | 79 | 210 | 0.000 |
| 3 | g1451.t1 | PANTHER | PTHR43969:SF7 | GST-CONTAINING FLYWCH ZINC-FINGER PROTEIN | 1 | 230 | 0.000 |
| 4 | g1451.t1 | PANTHER | PTHR43969 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 1 | 230 | 0.000 |
| 1 | g1451.t1 | Pfam | PF02798 | Glutathione S-transferase, N-terminal domain | 2 | 72 | 0.000 |
| 2 | g1451.t1 | Pfam | PF14497 | Glutathione S-transferase, C-terminal domain | 128 | 191 | 0.000 |
| 10 | g1451.t1 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 80 | 21.255 |
| 9 | g1451.t1 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 86 | 215 | 16.439 |
| 11 | g1451.t1 | SFLD | SFLDG00358 | Main (cytGST) | 1 | 189 | 0.000 |
| 12 | g1451.t1 | SFLD | SFLDS00019 | Glutathione Transferase (cytosolic) | 1 | 189 | 0.000 |
| 5 | g1451.t1 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 1 | 84 | 0.000 |
| 6 | g1451.t1 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 71 | 190 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006749 | glutathione metabolic process | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K00799 (glutathione S-transferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
