Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase D6.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1451 g1451.t4 TTS g1451.t4 11016552 11016552
chr_3 g1451 g1451.t4 isoform g1451.t4 11016647 11018505
chr_3 g1451 g1451.t4 exon g1451.t4.exon1 11016647 11017210
chr_3 g1451 g1451.t4 cds g1451.t4.CDS1 11016647 11017210
chr_3 g1451 g1451.t4 exon g1451.t4.exon2 11017275 11017411
chr_3 g1451 g1451.t4 cds g1451.t4.CDS2 11017275 11017409
chr_3 g1451 g1451.t4 exon g1451.t4.exon3 11018385 11018505
chr_3 g1451 g1451.t4 TSS g1451.t4 11018505 11018505

Sequences

>g1451.t4 Gene=g1451 Length=822
AGTGTACTTTTCGTTGTCGGTCGAGCGAGAAGCCTCTCGAGAATTCAAATTGTCTTTATC
GCTATAAAACTCACGTTCTATATTTTTATTCTAAATCATCAACCGAAAAACTATATAGTG
AATATGAAACTTTATGTTGTTAATGATGGACCTCCATCACTCGCATGTCGAATGACATTG
AAATATCTTAACGTTCCATTCGAATCAATCGATGTGAATTTTAATGTTGGCGAACATTTG
ACCGATGAGTATGCAAAGTTGAATCCACAAAAAGAAATTCCAGTTTTGGACGATAATGGA
TTCCTATTGAGTGAGCACATTGCAATTATGCAATACATTTGCGACAAATACGCTCCTGAT
ACGCCAGCTTATCCAAAAGATCCTCAATTGCGTGCTCTTGTCAATCATCGTCTTTGCTTT
AATATGGCACACTTTTATAATGCTGTCGCTCCCTATACTCTTGCACCAATTTTCTTCGAA
TATCCTCGAAATTCTATGGGTTTAAAACGAGTGCATATGGCTCTCGAAGTTTTTGAGGAA
TATTTAAAACGAGTTGGTAAAAAATATGTTGTTGCTGATCATGTTACAATTGCTGATTTT
GCATTGATTTCTTCAATGGTTTGCTTGGAAGGAATTGCATTTCCTTTTGATAAATTTACA
CGTGTTAAAACATGGTATGAAACATTCAAAAATGAAAACCCGGAAGTTTGGTCTATTGCT
GATGGTGTTTTGAAAATCATTCAAGATTTGGAGAAAAATCCACCTGATCTCAGTAAATTA
AATCATCCAATCCATCCAGTCAGAAAAACAGCAAAAAAATAA

>g1451.t4 Gene=g1451 Length=232
MKLYVVNDGPPSLACRMTLKYLNVPFESIDVNFNVGEHLTDEYAKLNPQKEIPVLDDNGF
LLSEHIAIMQYICDKYAPDTPAYPKDPQLRALVNHRLCFNMAHFYNAVAPYTLAPIFFEY
PRNSMGLKRVHMALEVFEEYLKRVGKKYVVADHVTIADFALISSMVCLEGIAFPFDKFTR
VKTWYETFKNENPEVWSIADGVLKIIQDLEKNPPDLSKLNHPIHPVRKTAKK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g1451.t4 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 77 0.000
7 g1451.t4 Gene3D G3DSA:1.20.1050.10 - 79 210 0.000
3 g1451.t4 PANTHER PTHR43969:SF7 GST-CONTAINING FLYWCH ZINC-FINGER PROTEIN 1 230 0.000
4 g1451.t4 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 1 230 0.000
1 g1451.t4 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 72 0.000
2 g1451.t4 Pfam PF14497 Glutathione S-transferase, C-terminal domain 128 191 0.000
10 g1451.t4 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 80 21.255
9 g1451.t4 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 86 215 16.439
11 g1451.t4 SFLD SFLDG00358 Main (cytGST) 1 189 0.000
12 g1451.t4 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 1 189 0.000
5 g1451.t4 SUPERFAMILY SSF52833 Thioredoxin-like 1 84 0.000
6 g1451.t4 SUPERFAMILY SSF47616 GST C-terminal domain-like 71 190 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed