Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase 1-1 .

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1451 g1451.t6 TTS g1451.t6 11016552 11016552
chr_3 g1451 g1451.t6 isoform g1451.t6 11016647 11018505
chr_3 g1451 g1451.t6 exon g1451.t6.exon1 11016647 11017210
chr_3 g1451 g1451.t6 cds g1451.t6.CDS1 11016647 11017210
chr_3 g1451 g1451.t6 exon g1451.t6.exon2 11017275 11017396
chr_3 g1451 g1451.t6 cds g1451.t6.CDS2 11017275 11017361
chr_3 g1451 g1451.t6 exon g1451.t6.exon3 11018383 11018505
chr_3 g1451 g1451.t6 TSS g1451.t6 11018505 11018505

Sequences

>g1451.t6 Gene=g1451 Length=809
AGTGTACTTTTCGTTGTCGGTCGAGCGAGAAGCCTCTCGAGAATTCAAATTGTCTTTATC
GCTATAAAACTCACGTTCTATATTTTTATTCTAAATCATCAACCGAAAAACTATATAGTG
AGTTTGTTAATGATGGACCTCCATCACTCGCATGTCGAATGACATTGAAATATCTTAACG
TTCCATTCGAATCAATCGATGTGAATTTTAATGTTGGCGAACATTTGACCGATGAGTATG
CAAAGTTGAATCCACAAAAAGAAATTCCAGTTTTGGACGATAATGGATTCCTATTGAGTG
AGCACATTGCAATTATGCAATACATTTGCGACAAATACGCTCCTGATACGCCAGCTTATC
CAAAAGATCCTCAATTGCGTGCTCTTGTCAATCATCGTCTTTGCTTTAATATGGCACACT
TTTATAATGCTGTCGCTCCCTATACTCTTGCACCAATTTTCTTCGAATATCCTCGAAATT
CTATGGGTTTAAAACGAGTGCATATGGCTCTCGAAGTTTTTGAGGAATATTTAAAACGAG
TTGGTAAAAAATATGTTGTTGCTGATCATGTTACAATTGCTGATTTTGCATTGATTTCTT
CAATGGTTTGCTTGGAAGGAATTGCATTTCCTTTTGATAAATTTACACGTGTTAAAACAT
GGTATGAAACATTCAAAAATGAAAACCCGGAAGTTTGGTCTATTGCTGATGGTGTTTTGA
AAATCATTCAAGATTTGGAGAAAAATCCACCTGATCTCAGTAAATTAAATCATCCAATCC
ATCCAGTCAGAAAAACAGCAAAAAAATAA

>g1451.t6 Gene=g1451 Length=216
MTLKYLNVPFESIDVNFNVGEHLTDEYAKLNPQKEIPVLDDNGFLLSEHIAIMQYICDKY
APDTPAYPKDPQLRALVNHRLCFNMAHFYNAVAPYTLAPIFFEYPRNSMGLKRVHMALEV
FEEYLKRVGKKYVVADHVTIADFALISSMVCLEGIAFPFDKFTRVKTWYETFKNENPEVW
SIADGVLKIIQDLEKNPPDLSKLNHPIHPVRKTAKK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g1451.t6 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 63 0.0000000
7 g1451.t6 Gene3D G3DSA:1.20.1050.10 - 64 194 0.0000000
3 g1451.t6 PANTHER PTHR43969:SF7 GST-CONTAINING FLYWCH ZINC-FINGER PROTEIN 1 214 0.0000000
4 g1451.t6 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 1 214 0.0000000
1 g1451.t6 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 56 0.0000000
2 g1451.t6 Pfam PF14497 Glutathione S-transferase, C-terminal domain 112 175 0.0000001
10 g1451.t6 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 64 17.8490000
9 g1451.t6 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 70 199 16.4390000
11 g1451.t6 SFLD SFLDG00358 Main (cytGST) 1 173 0.0000000
12 g1451.t6 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 1 173 0.0000000
5 g1451.t6 SUPERFAMILY SSF52833 Thioredoxin-like 1 74 0.0000000
6 g1451.t6 SUPERFAMILY SSF47616 GST C-terminal domain-like 55 174 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values