Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14529 g14529.t4 isoform g14529.t4 1001048 1002265
chr_4 g14529 g14529.t4 exon g14529.t4.exon1 1001048 1001700
chr_4 g14529 g14529.t4 cds g14529.t4.CDS1 1001048 1001700
chr_4 g14529 g14529.t4 exon g14529.t4.exon2 1001770 1002265
chr_4 g14529 g14529.t4 cds g14529.t4.CDS2 1001770 1002265
chr_4 g14529 g14529.t4 TSS g14529.t4 NA NA
chr_4 g14529 g14529.t4 TTS g14529.t4 NA NA

Sequences

>g14529.t4 Gene=g14529 Length=1149
ATGACAAAAGACATTAAATTTGACAATGTGCAGAAAGCACAAAATGACAAAAAAGTGAAA
ACCACAAATGAAGCTCTTCTTCTCAATAACACTTATGCTTGTCTTAAAAACAACGATGAT
GGTCAATACGTCGAAACATTAATGACAAAAGGTAATAAACAAAGCAACTCAAAACAACAA
AAACCGCCTCCAATTAACCTATTTGGAGTAAGTTTGCAACAATTGGACCAAATGTTCACC
ACTATGGACAAATCAAATTACGAACTTAAATTGACTGCTGATGGCATTAAACTGTTTTCA
AAAGAAATCGAAACATACAAAACAATTAGAAATATACTAATCGAGCACAATATACAATTT
TACACTCACCAATTACGTGAGGAACAAATGACAAAAATGGTACTGCATGGATTACCTGAA
TCAGATAGAGATACCAATACAGTTACACAAGCGTTGAAAGAGATACAATTAAATCCAGTC
ATGGTAAAGAAGATGCAAATTAAGAATGCAAGATATGTCGGTCATGCCGTCGATCTTGTT
TACTTCAAGAAAATTGATAATATTAGACTGAGTGATCTAATAGAGAATCATCGAATTGTG
TGCTGCATAAGAGTAAAATGGGAGCTGTATAAAAATCCTTCAAAAGGACCAACGTGTGCA
CAAAATCATAAATCAGGTGACTGTCCTCTAATTAAAAATGACAAAGGTGAAACAATTCTG
AAAAGAATAAAAGACACCGCGCTTAGGTGCGCTCTCTGTGGAATGAACCATGCTGCAAGC
TCAAAAGAATGCAGCAAAAGAAGAGAGTTTATCAACGCTAAAAAGTTCAACAAACCTGAA
ATAAAGAAAATAAACACAGAGAGAAGATCATTCCAACCAGCACCAGAATTGAATGATTTC
AATTTTCCAAGACTTCCTCAGAAAAAATTCGATCGCACTACCAAATCAGCACCTCCCCCG
CTCCGTGAAGTCCCGCCTAAGATACCGAATGTCGAGCAAACGGAAAACATTTTTAGCACT
GAAAGAAGAAGTGAATTGCTCAAAATTTTTACAGAAATGACCACTCAATTAGCACAAGCA
AAAACAAAATCAGAACAAGTCATGATACTCATGGACATTGCCCTCAAGTATATCGCTAAT
GATGAGTAA

>g14529.t4 Gene=g14529 Length=382
MTKDIKFDNVQKAQNDKKVKTTNEALLLNNTYACLKNNDDGQYVETLMTKGNKQSNSKQQ
KPPPINLFGVSLQQLDQMFTTMDKSNYELKLTADGIKLFSKEIETYKTIRNILIEHNIQF
YTHQLREEQMTKMVLHGLPESDRDTNTVTQALKEIQLNPVMVKKMQIKNARYVGHAVDLV
YFKKIDNIRLSDLIENHRIVCCIRVKWELYKNPSKGPTCAQNHKSGDCPLIKNDKGETIL
KRIKDTALRCALCGMNHAASSKECSKRREFINAKKFNKPEIKKINTERRSFQPAPELNDF
NFPRLPQKKFDRTTKSAPPPLREVPPKIPNVEQTENIFSTERRSELLKIFTEMTTQLAQA
KTKSEQVMILMDIALKYIANDE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g14529.t4 Coils Coil Coil 380 382 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed