Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14533 g14533.t1 isoform g14533.t1 1071881 1073041
chr_4 g14533 g14533.t1 exon g14533.t1.exon1 1071881 1073041
chr_4 g14533 g14533.t1 cds g14533.t1.CDS1 1071881 1073041
chr_4 g14533 g14533.t1 TSS g14533.t1 NA NA
chr_4 g14533 g14533.t1 TTS g14533.t1 NA NA

Sequences

>g14533.t1 Gene=g14533 Length=1161
ATGGAAGTTAAATGCACATTTTATACAGAAGGTTGGTGGCCAAAAAACCGTCCAAAATAT
ACTTGTCGTATTGAAAATCAATCAATAACAGAAAGGAAAATTTCTTGGTTCTTGGGTGAT
CATACATTAGAAAAACACAATGAAGATGTTCTAGCAATTTGGTTCGACTCATGTCCAATG
TCAAAATTGCCAAAAAATCTTGCTGACATTTTTGTCAACCTTGACACACTCTACATTAAC
AATTGTGGATTAAAGTCATTGTCAGGTGATGATTTAGCTAAAATACCAAATCTTAAGGAA
TTATATATAATGAACAATGAAATTTCACATCTGTCTGATGATTTATTGAGCACATTGAAG
CAACTTGAAATGGTGACATTGAGTGGCAATAAAACTTCAACAATTGGCAGCAAAATGATC
AATAAAATTGCTTCCGATAAGTTGAAAATGATTGACCTTCGTGATAATATTGTCATCAAT
GCTGTTTTTGCAAAAGAAATTTTTTTATTTCCAATTGGTGAAGATTATATGAAAATTTCA
AGTCTTAGAAAATTGGCTAAAATTATTAAAGATAAAAAAGAGTTGAACAAGAATTCAAAT
TGTTTATTTAATGACATAAAAGCTTTATTAGCTGATGATAAATTTCGTGATTTTAAAGTC
ATAATTAAGAATGAAACTTTTAAAGTTCATAAATTTATTCTTGTTGCACGCTCACCAGTC
ATTGCTGAAATGATTTATTCAAATCCTGATTGTAGTACATTGCAGTTAGTTGATATTCCT
ATTAGTGTTTTTCAGTCGATCCTTAATTACATTTATTTTGATGAATTGCCCATCGATGAT
GCAAATTTGATTGAAATTTATGCAGCTGCATGTAAATTAAAGATTAGAGGACTGAAAGAA
CACACAATTGAAAATTTATTGGATGCAGTTTGTGCTTTTAATGCAGTTGAAATTTTAACA
ATTAGTGCAAAATATGGAGATCAAAGTTTAATGGTAAAATCATTTGAAGAAATTCGTAAA
ATGTTTCCTGATAAAAGATTAAAAGGTGATTTGATGCATCAGCCAGAAAAAATTAAAGAA
ATGATTACAGCAAAAAGAATCATGGATGAGCAAGTGAGAAAAGTTAGAGAAAATTTTGAT
AGACAATTTAGTGAACTATGA

>g14533.t1 Gene=g14533 Length=386
MEVKCTFYTEGWWPKNRPKYTCRIENQSITERKISWFLGDHTLEKHNEDVLAIWFDSCPM
SKLPKNLADIFVNLDTLYINNCGLKSLSGDDLAKIPNLKELYIMNNEISHLSDDLLSTLK
QLEMVTLSGNKTSTIGSKMINKIASDKLKMIDLRDNIVINAVFAKEIFLFPIGEDYMKIS
SLRKLAKIIKDKKELNKNSNCLFNDIKALLADDKFRDFKVIIKNETFKVHKFILVARSPV
IAEMIYSNPDCSTLQLVDIPISVFQSILNYIYFDELPIDDANLIEIYAAACKLKIRGLKE
HTIENLLDAVCAFNAVEILTISAKYGDQSLMVKSFEEIRKMFPDKRLKGDLMHQPEKIKE
MITAKRIMDEQVRKVRENFDRQFSEL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g14533.t1 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 215 293 0.000
8 g14533.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 11 204 0.000
9 g14533.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 205 345 0.000
3 g14533.t1 PANTHER PTHR24413:SF213 FI01029P-RELATED 178 363 0.000
4 g14533.t1 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 178 363 0.000
1 g14533.t1 Pfam PF13855 Leucine rich repeat 73 131 0.000
2 g14533.t1 Pfam PF00651 BTB/POZ domain 208 306 0.000
11 g14533.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 73 94 5.779
10 g14533.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 97 118 7.165
12 g14533.t1 ProSiteProfiles PS50097 BTB domain profile. 216 280 14.977
7 g14533.t1 SMART SM00225 BTB_4 216 310 0.000
5 g14533.t1 SUPERFAMILY SSF52058 L domain-like 52 158 0.000
6 g14533.t1 SUPERFAMILY SSF54695 POZ domain 196 307 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed