General information for g14545.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14545 is located on chr_4: 1262189..1263085 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14545 | g14545.t1 | TTS | g14545.t1 | 1261976 | 1261976 |
| chr_4 | g14545 | g14545.t1 | isoform | g14545.t1 | 1262189 | 1263085 |
| chr_4 | g14545 | g14545.t1 | exon | g14545.t1.exon1 | 1262189 | 1263085 |
| chr_4 | g14545 | g14545.t1 | cds | g14545.t1.CDS1 | 1262189 | 1263085 |
| chr_4 | g14545 | g14545.t1 | TSS | g14545.t1 | 1263653 | 1263653 |
Sequences
>g14545.t1 Gene=g14545 Length=897
ATGATTATCACAAAGAAATCCTCATCTGAACATCAAGAAGTTTTTTGTAATTTTTCAACA
CAAACATGGCGAACAAGAAATGAAAAATTTTACCGTTGCTGTGTTTACAGTACTCGAATT
TTTGAGGACATTGAACTGAAATTTTCTGGAATTCATAAAGAAGAAAATTGCACAAATGAA
AGTGTCACAGCGATTGAATTTAATAAATGTGAAATTTCAAAAATTCCTCAAGGTTTGTTA
AAAGTTTTCCCAAATTTAAAAGCAATTAGTATTTATTGTTCGAAATTAAAAATTATAAGA
CGTGAAGATTTAAAAGAATATTGTGATTTAAAAGATTTTTATTTTGCTGATAATGAAATT
GAATTTTTACCAGGTGATATTTTTGATGATTGTGAAAATGTTGAAGTTGTTTCATTTTAT
GGCAATAAGATTAAAAAAATTGATGAAAATTTTTTAAGTGAAGCGAAAAATTTAAAATAT
TTGGATTTAGAAGGAAATTTATGCATTGACAAATGTTTTGATTCATTAAGTAATGAAGGC
AATTCAACTTTACATGACATAAAAAGTGAAATTATTGAAAAATTTTCAATTTTTTATTGG
AAAAATTTGTTAAAAGATTCAAAAATTGAAAATTTAAAGCTCAAAAATGAAAATCAAAAA
ATTTTAGAAACTGAAAATGGTTTAAAAGAAGAACTGAGAAAAGCAAATAGAAAATATTTA
AAAATGAAAATTGATGCTGAAAAAATGAAGGAAAAAATTGAAAATTTAGAAAATAAAAAT
TTTGAAATTAAAGAAAAATTGTTTAAATGGGAAAAACATGCAAAAAATTGTGAAGAAATA
TTGATAAAAATTCAAAATTTTTCTTTTAGTTTTTATGACCGAGTTTTGCAATTGTGA
>g14545.t1 Gene=g14545 Length=298
MIITKKSSSEHQEVFCNFSTQTWRTRNEKFYRCCVYSTRIFEDIELKFSGIHKEENCTNE
SVTAIEFNKCEISKIPQGLLKVFPNLKAISIYCSKLKIIRREDLKEYCDLKDFYFADNEI
EFLPGDIFDDCENVEVVSFYGNKIKKIDENFLSEAKNLKYLDLEGNLCIDKCFDSLSNEG
NSTLHDIKSEIIEKFSIFYWKNLLKDSKIENLKLKNENQKILETENGLKEELRKANRKYL
KMKIDAEKMKEKIENLENKNFEIKEKLFKWEKHAKNCEEILIKIQNFSFSFYDRVLQL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g14545.t1 | Coils | Coil | Coil | 204 | 273 | - |
| 3 | g14545.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 38 | 295 | 3.4E-19 |
| 1 | g14545.t1 | Pfam | PF13855 | Leucine rich repeat | 115 | 166 | 2.7E-7 |
| 2 | g14545.t1 | SUPERFAMILY | SSF52058 | L domain-like | 48 | 170 | 2.89E-16 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed