General information for g14551.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Fatty acid synthase.
Parent gene
- The parent gene g14551 is located on chr_4: 1322491..1328241 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14551 | g14551.t2 | isoform | g14551.t2 | 1322491 | 1323490 |
| chr_4 | g14551 | g14551.t2 | exon | g14551.t2.exon1 | 1322491 | 1322528 |
| chr_4 | g14551 | g14551.t2 | cds | g14551.t2.CDS1 | 1322493 | 1322528 |
| chr_4 | g14551 | g14551.t2 | exon | g14551.t2.exon2 | 1322584 | 1323490 |
| chr_4 | g14551 | g14551.t2 | cds | g14551.t2.CDS2 | 1322584 | 1323441 |
| chr_4 | g14551 | g14551.t2 | TSS | g14551.t2 | NA | NA |
| chr_4 | g14551 | g14551.t2 | TTS | g14551.t2 | NA | NA |
Sequences
>g14551.t2 Gene=g14551 Length=945
AAATGGTCAATGGGGTTCTTATCGTCACTTAACTCTTCAACAACCTTCAATGTCAAAGAT
TTCTCCAACAGAAGTCTCAGCATTTTTAAATATTCAAACTCGTGGAGATCTTTCATCACT
TAAATGGATTCAACAGCCTTTAAAACTAAAAGTTGATGGAAAACATGAAGTTGTTCGTAT
TCATTATGCAGCATTAAATTTTCGTGATGTCATGATTGCAACTGGTCGTGTTGGTCCAGA
AATGTTTGGTGATAAAAGAAATGATCAATTGAAAATTCTTGGATTTGAATTTTCTGGTAT
AACAATAACAGGTCGAAGAGTTTATGGTATGGCACCATATGGATGTCTTTCAACACATTT
TTCTGATGAAAGAGTCATTTTACTTGATGTACCAAAAGAATGGTCACTAGAACAAGCAGC
AACAATTATTGGAACTTATGGAACAATAGCAATATCACTTTTTATGAAATGTCAAATTGA
AAAAGATAAATCAATTTTAATTCATGCTGGCTCGGGTGGTGTTGGTTTATCAGCTTTATA
TGTTGCTTTTGCAAGTGGCATGGAGGTTTTTACAACTGTCAGTAATGAAGAAAAACGACA
GTTTTTGTTGGACACTTTTCCAAAATTAAAACCTGAAAATATTGGAAATTCACGTGATAC
AACCTTTGAAGATATGATTATGAAAAGAACAAATGGAAGAGGTGTTGATTATGTCCTAAA
TTCTCTATCTGATGATAAACTTTTGGCTTCACTTAGATGTGTTGCTAAAGCTGGATATTT
TATTGAAATTGGCAAATCTGACATTGTTAGAGACAATAAAATTAATTTGGCTTGCTTTGC
GAATGAATTGACATTTATTTCTGTCAATATGGTCAATTGTGCTTTTACCGAAGGTCGTTC
TTTTGAGGATTTAAAATCATTCGTCAAACAAGGAATCAAGAAAAA
>g14551.t2 Gene=g14551 Length=298
MSKISPTEVSAFLNIQTRGDLSSLKWIQQPLKLKVDGKHEVVRIHYAALNFRDVMIATGR
VGPEMFGDKRNDQLKILGFEFSGITITGRRVYGMAPYGCLSTHFSDERVILLDVPKEWSL
EQAATIIGTYGTIAISLFMKCQIEKDKSILIHAGSGGVGLSALYVAFASGMEVFTTVSNE
EKRQFLLDTFPKLKPENIGNSRDTTFEDMIMKRTNGRGVDYVLNSLSDDKLLASLRCVAK
AGYFIEIGKSDIVRDNKINLACFANELTFISVNMVNCAFTEGRSFEDLKSFVKQGIKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g14551.t2 | CDD | cd05195 | enoyl_red | 39 | 296 | 0 |
| 7 | g14551.t2 | Gene3D | G3DSA:3.90.180.10 | - | 9 | 298 | 0 |
| 2 | g14551.t2 | PANTHER | PTHR43775 | FATTY ACID SYNTHASE | 3 | 296 | 0 |
| 3 | g14551.t2 | PANTHER | PTHR43775:SF23 | FATTY ACID SYNTHASE 3 | 3 | 296 | 0 |
| 1 | g14551.t2 | Pfam | PF00107 | Zinc-binding dehydrogenase | 157 | 276 | 0 |
| 6 | g14551.t2 | SMART | SM00829 | PKS_ER_names_mod | 19 | 296 | 0 |
| 5 | g14551.t2 | SUPERFAMILY | SSF50129 | GroES-like | 24 | 152 | 0 |
| 4 | g14551.t2 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 121 | 280 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed