General information for g1456.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ADP-ribosylation factor GTPase-activating protein 1.
Parent gene
- The parent gene g1456 is located on chr_3: 11045027..11045850 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1456 | g1456.t2 | isoform | g1456.t2 | 11044081 | 11045578 |
| chr_3 | g1456 | g1456.t2 | exon | g1456.t2.exon1 | 11044081 | 11045578 |
| chr_3 | g1456 | g1456.t2 | cds | g1456.t2.CDS1 | 11044496 | 11045533 |
| chr_3 | g1456 | g1456.t2 | TSS | g1456.t2 | 11045916 | 11045916 |
| chr_3 | g1456 | g1456.t2 | TTS | g1456.t2 | NA | NA |
Sequences
>g1456.t2 Gene=g1456 Length=1498
CATCGAGGATTGGGAGTACACATTTCATTCATTCGTTCAATTACAATGGACAAATGGAAA
GACCTTGAACTAGAGAAAATGAAAGTAGGAGGAAATCGGAAGGCAAAACAATTCCTTGAA
GCTGAAGATAGTTGGAATGAATCAACACGTTTCAATGATCGCTACAATTCATTAGCAGCT
GCTTTATATCGTGACAAAATTTCAGCTTTGGCAGAAGGACGTGAATGGGATTATGATGAA
GCAAAGAAGAGATTGGCAAAGAGACCATCAGCTCACATTCCTCACTCGAAAAGCGCTGGC
GCACTTTCATCGAATAATTATTCTTCAGGCAATAACTATGAAGCAAGTTCTGGTGGCGGT
TATCAAAATGCAGAATTTAACATGAAAGACATCAGTGATCAGAAAGAAAAATTCTTTGAT
AGAATTCAAGCTGAGAATGCAATGAGGCGAGATGATTTGCCGCCAAGTCAAGGTGGCCGT
TATCAAGGCTTTGGGAATCAAGTTCAAAATAATTCTGTTAGAAAGAGTCAAAGTGAGTTC
TTTGATACAACTTGGTCTTCATTCTCGAGTGGCTGGGGATTGCTTTCAAATAGCGCTACA
AAACTTGCTCAAACAGCTAAAGATTATGGGAATATTGCATCTCAAAAAATGAAAGAATCG
AATCTGCTTGATGTTGCTGGAAAAGAAGTTTTTAATATCGCAAATAAAGTAACAGATCTG
GGAAGAAAAGGTCTTCAAACCGCTACAAGCGCAATTAGTGGAGCTAACTATAACGACATT
GACAATCCACAACAACAGCAAAAAAGCAATTACGAACAGAATCAATTTAATAATGATTGG
ACCAATGTCGATTCAAATGGTTTTACAGATGACGACCAATTCGAATCATATCAAAGTTAC
GAAAGCCCTAAAAGTGTTGCAAGCGAGAAAACTAGTATAAAAGCCAGTCGTCCAAGACCG
CAAGCATCAGATAGCTTAGTAAATGATTTTAAAAATATGGATGTAAAGAGTGGTATAAAA
GTAGATAGCTCAAAGAAAACAAATAAACAGGAAGATGATTTATGGAATATGTTGAACAAC
TAGACAAATTGCTAAATATAATAAATCTATATTTAAGATTAAGTCACCATCATGATATAA
TGAATGTGCATTTGTGTGAAATGTAGCTTAACACTAGAAAATATTCTATCTGTGATAAAG
TTACATAAAAAAGGTGAAGGAGAGAAAATATTCCAATAAAATAATATCGAGTGTTTGATG
AGAAAAAAGGAAAAGAATTATCTATTGTCCACTCTTGCTGCAACACAATTGCCATCGAAA
ATAAAAATCCCAATAACTACTTTTTAATTTGCATAAATGTAATTATTCTTCTACTTTTAT
TTATCCAGCTTTCAATCAATCAATGCATATAGGGTATATACTCATAAAATGTTAATTTTT
GTTTGAGTTAAAAAGTAAAAAATAAAAAAGAATCCGCAAACTACTTTAACGTACATCT
>g1456.t2 Gene=g1456 Length=345
MDKWKDLELEKMKVGGNRKAKQFLEAEDSWNESTRFNDRYNSLAAALYRDKISALAEGRE
WDYDEAKKRLAKRPSAHIPHSKSAGALSSNNYSSGNNYEASSGGGYQNAEFNMKDISDQK
EKFFDRIQAENAMRRDDLPPSQGGRYQGFGNQVQNNSVRKSQSEFFDTTWSSFSSGWGLL
SNSATKLAQTAKDYGNIASQKMKESNLLDVAGKEVFNIANKVTDLGRKGLQTATSAISGA
NYNDIDNPQQQQKSNYEQNQFNNDWTNVDSNGFTDDDQFESYQSYESPKSVASEKTSIKA
SRPRPQASDSLVNDFKNMDVKSGIKVDSSKKTNKQEDDLWNMLNN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g1456.t2 | Gene3D | G3DSA:3.30.40.160 | - | 1 | 65 | 2.1E-12 |
| 2 | g1456.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 92 | - |
| 3 | g1456.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 315 | - |
| 5 | g1456.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 345 | - |
| 4 | g1456.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 337 | - |
| 1 | g1456.t2 | PANTHER | PTHR46395 | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1 | 1 | 333 | 1.4E-54 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
