General information for g1456.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ADP-ribosylation factor GTPase-activating protein 1.
Parent gene
- The parent gene g1456 is located on chr_3: 11045027..11045850 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1456 | g1456.t3 | isoform | g1456.t3 | 11044081 | 11045850 |
| chr_3 | g1456 | g1456.t3 | exon | g1456.t3.exon1 | 11044081 | 11045686 |
| chr_3 | g1456 | g1456.t3 | cds | g1456.t3.CDS1 | 11044496 | 11045533 |
| chr_3 | g1456 | g1456.t3 | exon | g1456.t3.exon2 | 11045751 | 11045850 |
| chr_3 | g1456 | g1456.t3 | TSS | g1456.t3 | 11045916 | 11045916 |
| chr_3 | g1456 | g1456.t3 | TTS | g1456.t3 | NA | NA |
Sequences
>g1456.t3 Gene=g1456 Length=1706
ATGAGTTCACCTCGTTCGCGAAGACTTTTTCAGGAAATAAAAACAAATGACGAGAGCAAT
AAGTTCTGCTTTGATTGTGGAGCACATGCTCCTCAATGGGCATCTGTACAATATGGAATT
TGGGTTTGCCTCGAATGTAGCGGAAAAGTAAGTTTCTTCTTTGCTTTTACTTTCATTTTA
ACATTAACACATCTCTAATTTCCAAAAGCATCGAGGATTGGGAGTACACATTTCATTCAT
TCGTTCAATTACAATGGACAAATGGAAAGACCTTGAACTAGAGAAAATGAAAGTAGGAGG
AAATCGGAAGGCAAAACAATTCCTTGAAGCTGAAGATAGTTGGAATGAATCAACACGTTT
CAATGATCGCTACAATTCATTAGCAGCTGCTTTATATCGTGACAAAATTTCAGCTTTGGC
AGAAGGACGTGAATGGGATTATGATGAAGCAAAGAAGAGATTGGCAAAGAGACCATCAGC
TCACATTCCTCACTCGAAAAGCGCTGGCGCACTTTCATCGAATAATTATTCTTCAGGCAA
TAACTATGAAGCAAGTTCTGGTGGCGGTTATCAAAATGCAGAATTTAACATGAAAGACAT
CAGTGATCAGAAAGAAAAATTCTTTGATAGAATTCAAGCTGAGAATGCAATGAGGCGAGA
TGATTTGCCGCCAAGTCAAGGTGGCCGTTATCAAGGCTTTGGGAATCAAGTTCAAAATAA
TTCTGTTAGAAAGAGTCAAAGTGAGTTCTTTGATACAACTTGGTCTTCATTCTCGAGTGG
CTGGGGATTGCTTTCAAATAGCGCTACAAAACTTGCTCAAACAGCTAAAGATTATGGGAA
TATTGCATCTCAAAAAATGAAAGAATCGAATCTGCTTGATGTTGCTGGAAAAGAAGTTTT
TAATATCGCAAATAAAGTAACAGATCTGGGAAGAAAAGGTCTTCAAACCGCTACAAGCGC
AATTAGTGGAGCTAACTATAACGACATTGACAATCCACAACAACAGCAAAAAAGCAATTA
CGAACAGAATCAATTTAATAATGATTGGACCAATGTCGATTCAAATGGTTTTACAGATGA
CGACCAATTCGAATCATATCAAAGTTACGAAAGCCCTAAAAGTGTTGCAAGCGAGAAAAC
TAGTATAAAAGCCAGTCGTCCAAGACCGCAAGCATCAGATAGCTTAGTAAATGATTTTAA
AAATATGGATGTAAAGAGTGGTATAAAAGTAGATAGCTCAAAGAAAACAAATAAACAGGA
AGATGATTTATGGAATATGTTGAACAACTAGACAAATTGCTAAATATAATAAATCTATAT
TTAAGATTAAGTCACCATCATGATATAATGAATGTGCATTTGTGTGAAATGTAGCTTAAC
ACTAGAAAATATTCTATCTGTGATAAAGTTACATAAAAAAGGTGAAGGAGAGAAAATATT
CCAATAAAATAATATCGAGTGTTTGATGAGAAAAAAGGAAAAGAATTATCTATTGTCCAC
TCTTGCTGCAACACAATTGCCATCGAAAATAAAAATCCCAATAACTACTTTTTAATTTGC
ATAAATGTAATTATTCTTCTACTTTTATTTATCCAGCTTTCAATCAATCAATGCATATAG
GGTATATACTCATAAAATGTTAATTTTTGTTTGAGTTAAAAAGTAAAAAATAAAAAAGAA
TCCGCAAACTACTTTAACGTACATCT
>g1456.t3 Gene=g1456 Length=345
MDKWKDLELEKMKVGGNRKAKQFLEAEDSWNESTRFNDRYNSLAAALYRDKISALAEGRE
WDYDEAKKRLAKRPSAHIPHSKSAGALSSNNYSSGNNYEASSGGGYQNAEFNMKDISDQK
EKFFDRIQAENAMRRDDLPPSQGGRYQGFGNQVQNNSVRKSQSEFFDTTWSSFSSGWGLL
SNSATKLAQTAKDYGNIASQKMKESNLLDVAGKEVFNIANKVTDLGRKGLQTATSAISGA
NYNDIDNPQQQQKSNYEQNQFNNDWTNVDSNGFTDDDQFESYQSYESPKSVASEKTSIKA
SRPRPQASDSLVNDFKNMDVKSGIKVDSSKKTNKQEDDLWNMLNN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g1456.t3 | Gene3D | G3DSA:3.30.40.160 | - | 1 | 65 | 2.1E-12 |
| 2 | g1456.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 92 | - |
| 3 | g1456.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 315 | - |
| 5 | g1456.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 345 | - |
| 4 | g1456.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 337 | - |
| 1 | g1456.t3 | PANTHER | PTHR46395 | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1 | 1 | 333 | 1.4E-54 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
