Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ADP-ribosylation factor GTPase-activating protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1456 g1456.t6 TTS g1456.t6 11044317 11044317
chr_3 g1456 g1456.t6 isoform g1456.t6 11044496 11045850
chr_3 g1456 g1456.t6 exon g1456.t6.exon1 11044496 11045578
chr_3 g1456 g1456.t6 cds g1456.t6.CDS1 11044496 11045533
chr_3 g1456 g1456.t6 exon g1456.t6.exon2 11045636 11045686
chr_3 g1456 g1456.t6 exon g1456.t6.exon3 11045751 11045850
chr_3 g1456 g1456.t6 TSS g1456.t6 11045916 11045916

Sequences

>g1456.t6 Gene=g1456 Length=1234
ATGAGTTCACCTCGTTCGCGAAGACTTTTTCAGGAAATAAAAACAAATGACGAGAGCAAT
AAGTTCTGCTTTGATTGTGGAGCACATGCTCCTCAATGGGCATCTGTACAATATGGAATT
TGGGTTTGCCTCGAATGTAGCGGAAAAGTAACATCGAGGATTGGGAGTACACATTTCATT
CATTCGTTCAATTACAATGGACAAATGGAAAGACCTTGAACTAGAGAAAATGAAAGTAGG
AGGAAATCGGAAGGCAAAACAATTCCTTGAAGCTGAAGATAGTTGGAATGAATCAACACG
TTTCAATGATCGCTACAATTCATTAGCAGCTGCTTTATATCGTGACAAAATTTCAGCTTT
GGCAGAAGGACGTGAATGGGATTATGATGAAGCAAAGAAGAGATTGGCAAAGAGACCATC
AGCTCACATTCCTCACTCGAAAAGCGCTGGCGCACTTTCATCGAATAATTATTCTTCAGG
CAATAACTATGAAGCAAGTTCTGGTGGCGGTTATCAAAATGCAGAATTTAACATGAAAGA
CATCAGTGATCAGAAAGAAAAATTCTTTGATAGAATTCAAGCTGAGAATGCAATGAGGCG
AGATGATTTGCCGCCAAGTCAAGGTGGCCGTTATCAAGGCTTTGGGAATCAAGTTCAAAA
TAATTCTGTTAGAAAGAGTCAAAGTGAGTTCTTTGATACAACTTGGTCTTCATTCTCGAG
TGGCTGGGGATTGCTTTCAAATAGCGCTACAAAACTTGCTCAAACAGCTAAAGATTATGG
GAATATTGCATCTCAAAAAATGAAAGAATCGAATCTGCTTGATGTTGCTGGAAAAGAAGT
TTTTAATATCGCAAATAAAGTAACAGATCTGGGAAGAAAAGGTCTTCAAACCGCTACAAG
CGCAATTAGTGGAGCTAACTATAACGACATTGACAATCCACAACAACAGCAAAAAAGCAA
TTACGAACAGAATCAATTTAATAATGATTGGACCAATGTCGATTCAAATGGTTTTACAGA
TGACGACCAATTCGAATCATATCAAAGTTACGAAAGCCCTAAAAGTGTTGCAAGCGAGAA
AACTAGTATAAAAGCCAGTCGTCCAAGACCGCAAGCATCAGATAGCTTAGTAAATGATTT
TAAAAATATGGATGTAAAGAGTGGTATAAAAGTAGATAGCTCAAAGAAAACAAATAAACA
GGAAGATGATTTATGGAATATGTTGAACAACTAG

>g1456.t6 Gene=g1456 Length=345
MDKWKDLELEKMKVGGNRKAKQFLEAEDSWNESTRFNDRYNSLAAALYRDKISALAEGRE
WDYDEAKKRLAKRPSAHIPHSKSAGALSSNNYSSGNNYEASSGGGYQNAEFNMKDISDQK
EKFFDRIQAENAMRRDDLPPSQGGRYQGFGNQVQNNSVRKSQSEFFDTTWSSFSSGWGLL
SNSATKLAQTAKDYGNIASQKMKESNLLDVAGKEVFNIANKVTDLGRKGLQTATSAISGA
NYNDIDNPQQQQKSNYEQNQFNNDWTNVDSNGFTDDDQFESYQSYESPKSVASEKTSIKA
SRPRPQASDSLVNDFKNMDVKSGIKVDSSKKTNKQEDDLWNMLNN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g1456.t6 Gene3D G3DSA:3.30.40.160 - 1 65 2.1E-12
2 g1456.t6 MobiDBLite mobidb-lite consensus disorder prediction 69 92 -
3 g1456.t6 MobiDBLite mobidb-lite consensus disorder prediction 281 315 -
5 g1456.t6 MobiDBLite mobidb-lite consensus disorder prediction 281 345 -
4 g1456.t6 MobiDBLite mobidb-lite consensus disorder prediction 320 337 -
1 g1456.t6 PANTHER PTHR46395 ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1 1 333 1.4E-54

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed