General information for g14566.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14566 is located on chr_4: 1368530..1369140 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14566 | g14566.t1 | isoform | g14566.t1 | 1368530 | 1369010 |
| chr_4 | g14566 | g14566.t1 | exon | g14566.t1.exon1 | 1368530 | 1368636 |
| chr_4 | g14566 | g14566.t1 | cds | g14566.t1.CDS1 | 1368530 | 1368636 |
| chr_4 | g14566 | g14566.t1 | exon | g14566.t1.exon2 | 1368734 | 1369010 |
| chr_4 | g14566 | g14566.t1 | cds | g14566.t1.CDS2 | 1368734 | 1369010 |
| chr_4 | g14566 | g14566.t1 | TSS | g14566.t1 | NA | NA |
| chr_4 | g14566 | g14566.t1 | TTS | g14566.t1 | NA | NA |
Sequences
>g14566.t1 Gene=g14566 Length=384
ATGCTAATCAAAATCAAAGAAATCAACGGATCAGAATTCACAATTGATATCGATCCATCA
CAATCAGTTGCAGTTCTCAAATCAAAAATAGAAGAAGAAAAGAAGATCCCAACTATGGAA
ATTAAATTATTGTTTAGTGGCAAAGTTTTACAAGATGAAAAAACAATTGAAGATTATAAA
ATAAGTGAAACGAGCAAAATGATGTTGACAAGAGTGAAAGTTGACTTGAAAGTTTTACTA
CAAAAGGCTTTGATGAAATATTATGATTCTGAGAAAGCAACATCAATAGCATCAGCTGTA
GTAGCAAATATGAAAAAGCGAGTTCAAGAATATTCACTGGATGATATTGAGAAATTAGCT
GAAGCATGGAATCAAAACAGATAA
>g14566.t1 Gene=g14566 Length=127
MLIKIKEINGSEFTIDIDPSQSVAVLKSKIEEEKKIPTMEIKLLFSGKVLQDEKTIEDYK
ISETSKMMLTRVKVDLKVLLQKALMKYYDSEKATSIASAVVANMKKRVQEYSLDDIEKLA
EAWNQNR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g14566.t1 | CDD | cd17039 | Ubl_ubiquitin_like | 3 | 69 | 0.0000000 |
| 7 | g14566.t1 | Gene3D | G3DSA:3.10.20.90 | - | 1 | 70 | 0.0000000 |
| 2 | g14566.t1 | PANTHER | PTHR46555 | UBIQUITIN-LIKE PROTEIN 4A | 1 | 125 | 0.0000000 |
| 5 | g14566.t1 | PRINTS | PR00348 | Ubiquitin signature | 11 | 31 | 0.0000006 |
| 4 | g14566.t1 | PRINTS | PR00348 | Ubiquitin signature | 32 | 52 | 0.0000006 |
| 3 | g14566.t1 | PRINTS | PR00348 | Ubiquitin signature | 53 | 74 | 0.0000006 |
| 1 | g14566.t1 | Pfam | PF00240 | Ubiquitin family | 3 | 69 | 0.0000000 |
| 10 | g14566.t1 | ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 69 | 20.4790000 |
| 9 | g14566.t1 | SMART | SM00213 | ubq_7 | 1 | 72 | 0.0000000 |
| 6 | g14566.t1 | SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 71 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K23388 (ubiquitin-like protein 4)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
