Gene loci information

Transcript annotation

  • This transcript has been annotated as Inorganic pyrophosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1457 g1457.t13 TSS g1457.t13 11046179 11046179
chr_3 g1457 g1457.t13 isoform g1457.t13 11046205 11047585
chr_3 g1457 g1457.t13 exon g1457.t13.exon1 11046205 11046261
chr_3 g1457 g1457.t13 exon g1457.t13.exon2 11046555 11046673
chr_3 g1457 g1457.t13 cds g1457.t13.CDS1 11046632 11046673
chr_3 g1457 g1457.t13 exon g1457.t13.exon3 11046751 11047298
chr_3 g1457 g1457.t13 cds g1457.t13.CDS2 11046751 11047298
chr_3 g1457 g1457.t13 exon g1457.t13.exon4 11047444 11047585
chr_3 g1457 g1457.t13 cds g1457.t13.CDS3 11047444 11047585
chr_3 g1457 g1457.t13 TTS g1457.t13 11047864 11047864

Sequences

>g1457.t13 Gene=g1457 Length=866
ATGGCTGGAAAATTTGTTGCTGTCGAAAAAGGAGCTCCCAATTCAAAGGATTTCCGAAAA
ATGCAGCTGGAACACCAATTTCACCTTTACATGACATTCCTTTATTTGCCAACGATAGTT
CACAGGTCTATAATATGGTAGTTGAAGTGCCGCGTTGGACAAATGCAAAGATGGAGATTA
CACTCGCGGAAGAATTAAATCCAATCAAACAAGATATTAAAAAAGAGAAGCTTAGATTTG
TTGCTAATGTATTCCCTCATAAAGGATACATTTGGAATTATGGTGCATTGCCTCAAACAT
GGGAATATCCTGGACATGTAGATAAATCAACTGGTTGCAAAGGTGACAACGATCCAATTG
ATGTTTGTGAAATTGGCTCACGTGTAGCTAAACGCGGTGATGTCATTCAAGTTAAAATTC
TCGGCACTCTTGCACTCATCGATGAAGGTGAAACTGACTGGAAAGTTTTTGCTATTGATA
TTAATGATCCAGTTGCTGATCAAATGGAAGATGTACAAGACATTGAGAAATTCTTCCCTG
GTTTATTAAGAGCAACAGTAGAATGGTTCAAATTTTATAAAGTACCAGATGGTAAACCTG
AAAATCAATTTGCATTTAATGCTGAAGCAAAGAACGCTGCATTTGCTAAAAATATCGTGA
CGGAAACTCACGCTTTTTGGCAGCGCTTGATTAAAAAAGAAGTCGAAAGCCCTAAGATTT
CATGTTCAACTGTAGAAAATACAGATTCACCATTTGTTATCTCTAGCGATCAAGCAGAAG
AAATATTTTCAAAAGCCACTGAAGGAGGCGATCCAGAGCCATTTAATGAAGCAATCAACA
AGTGGCATTTTCTTCATCTTCAATAG

>g1457.t13 Gene=g1457 Length=243
MVVEVPRWTNAKMEITLAEELNPIKQDIKKEKLRFVANVFPHKGYIWNYGALPQTWEYPG
HVDKSTGCKGDNDPIDVCEIGSRVAKRGDVIQVKILGTLALIDEGETDWKVFAIDINDPV
ADQMEDVQDIEKFFPGLLRATVEWFKFYKVPDGKPENQFAFNAEAKNAAFAKNIVTETHA
FWQRLIKKEVESPKISCSTVENTDSPFVISSDQAEEIFSKATEGGDPEPFNEAINKWHFL
HLQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g1457.t13 CDD cd00412 pyrophosphatase 1 179 3.1797E-65
6 g1457.t13 Gene3D G3DSA:3.90.80.10 Inorganic Pyrophosphatase 1 243 2.5E-109
2 g1457.t13 PANTHER PTHR10286:SF49 INORGANIC PYROPHOSPHATASE 2, MITOCHONDRIAL 1 214 6.0E-106
3 g1457.t13 PANTHER PTHR10286 INORGANIC PYROPHOSPHATASE 1 214 6.0E-106
1 g1457.t13 Pfam PF00719 Inorganic pyrophosphatase 1 183 1.5E-54
5 g1457.t13 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 71 77 -
4 g1457.t13 SUPERFAMILY SSF50324 Inorganic pyrophosphatase 1 240 5.63E-89

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000287 magnesium ion binding MF
GO:0004427 inorganic diphosphatase activity MF
GO:0006796 phosphate-containing compound metabolic process BP
GO:0005737 cytoplasm CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed