Gene loci information

Transcript annotation

  • This transcript has been annotated as Inorganic pyrophosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1457 g1457.t14 TSS g1457.t14 11046179 11046179
chr_3 g1457 g1457.t14 isoform g1457.t14 11046205 11047585
chr_3 g1457 g1457.t14 exon g1457.t14.exon1 11046205 11046261
chr_3 g1457 g1457.t14 exon g1457.t14.exon2 11046555 11046673
chr_3 g1457 g1457.t14 cds g1457.t14.CDS1 11046632 11046673
chr_3 g1457 g1457.t14 exon g1457.t14.exon3 11046751 11047302
chr_3 g1457 g1457.t14 cds g1457.t14.CDS2 11046751 11047302
chr_3 g1457 g1457.t14 exon g1457.t14.exon4 11047464 11047585
chr_3 g1457 g1457.t14 TTS g1457.t14 11047864 11047864

Sequences

>g1457.t14 Gene=g1457 Length=850
ATGGCTGGAAAATTTGTTGCTGTCGAAAAAGGAGCTCCCAATTCAAAGGATTTCCGAAAA
ATGCAGCTGGAACACCAATTTCACCTTTACATGACATTCCTTTATTTGCCAACGATAGTT
CACAGGTCTATAATATGGTAGTTGAAGTGCCGCGTTGGACAAATGCAAAGATGGAGATTA
CACTCGCGGAAGAATTAAATCCAATCAAACAAGATATTAAAAAAGAGAAGCTTAGATTTG
TTGCTAATGTATTCCCTCATAAAGGATACATTTGGAATTATGGTGCATTGCCTCAAACAT
GGGAATATCCTGGACATGTAGATAAATCAACTGGTTGCAAAGGTGACAACGATCCAATTG
ATGTTTGTGAAATTGGCTCACGTGTAGCTAAACGCGGTGATGTCATTCAAGTTAAAATTC
TCGGCACTCTTGCACTCATCGATGAAGGTGAAACTGACTGGAAAGTTTTTGCTATTGATA
TTAATGATCCAGTTGCTGATCAAATGGAAGATGTACAAGACATTGAGAAATTCTTCCCTG
GTTTATTAAGAGCAACAGTAGAATGGTTCAAATTTTATAAAGTACCAGATGGTAAACCTG
AAAATCAATTTGCATTTAATGCTGAAGCAAAGAACGCTGCATTTGCTAAAAATATCGTGA
CGGAAACTCACGCTTTTTGGCAGCGCTTGATTAAAAAAGAAGTCGAAAGCCCTAAGATTT
CATGGTGAATTCACCATTTGTTATCTCTAGCGATCAAGCAGAAGAAATATTTTCAAAAGC
CACTGAAGGAGGCGATCCAGAGCCATTTAATGAAGCAATCAACAAGTGGCATTTTCTTCA
TCTTCAATAG

>g1457.t14 Gene=g1457 Length=197
MVVEVPRWTNAKMEITLAEELNPIKQDIKKEKLRFVANVFPHKGYIWNYGALPQTWEYPG
HVDKSTGCKGDNDPIDVCEIGSRVAKRGDVIQVKILGTLALIDEGETDWKVFAIDINDPV
ADQMEDVQDIEKFFPGLLRATVEWFKFYKVPDGKPENQFAFNAEAKNAAFAKNIVTETHA
FWQRLIKKEVESPKISW

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g1457.t14 CDD cd00412 pyrophosphatase 1 179 6.11699E-65
6 g1457.t14 Gene3D G3DSA:3.90.80.10 Inorganic Pyrophosphatase 1 196 1.7E-100
2 g1457.t14 PANTHER PTHR10286:SF49 INORGANIC PYROPHOSPHATASE 2, MITOCHONDRIAL 1 191 1.0E-103
3 g1457.t14 PANTHER PTHR10286 INORGANIC PYROPHOSPHATASE 1 191 1.0E-103
1 g1457.t14 Pfam PF00719 Inorganic pyrophosphatase 1 183 7.2E-55
5 g1457.t14 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 71 77 -
4 g1457.t14 SUPERFAMILY SSF50324 Inorganic pyrophosphatase 1 194 1.22E-84

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000287 magnesium ion binding MF
GO:0004427 inorganic diphosphatase activity MF
GO:0006796 phosphate-containing compound metabolic process BP
GO:0005737 cytoplasm CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed