Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Coagulation factor X.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14587 g14587.t2 TSS g14587.t2 1420478 1420478
chr_4 g14587 g14587.t2 isoform g14587.t2 1420563 1421924
chr_4 g14587 g14587.t2 exon g14587.t2.exon1 1420563 1420781
chr_4 g14587 g14587.t2 exon g14587.t2.exon2 1420913 1421035
chr_4 g14587 g14587.t2 cds g14587.t2.CDS1 1420966 1421035
chr_4 g14587 g14587.t2 exon g14587.t2.exon3 1421101 1421169
chr_4 g14587 g14587.t2 cds g14587.t2.CDS2 1421101 1421169
chr_4 g14587 g14587.t2 exon g14587.t2.exon4 1421413 1421454
chr_4 g14587 g14587.t2 cds g14587.t2.CDS3 1421413 1421454
chr_4 g14587 g14587.t2 exon g14587.t2.exon5 1421506 1421924
chr_4 g14587 g14587.t2 cds g14587.t2.CDS4 1421506 1421924
chr_4 g14587 g14587.t2 TTS g14587.t2 1422379 1422379

Sequences

>g14587.t2 Gene=g14587 Length=872
CTTCGGGTGAAGCATGTACAACATTTGATGGTTCAAGAGGTGTTTGCAAACACGTTCAAA
GTTGTACAGAAATTGAAGAGTTAACAAAACTTCAGCCAAATGCCAAATTTACTCGTTGTG
ATCGTTTCAAAAGACTTGTTTGTTGTCCAATCAAAAATTTTTCTGCAGAAAATGAAAATA
AAATTTTTCAATCATCTTCTGTAAGAATCAGTGAAAGAAAATGTAGAGAATATGGAAAAA
GTGTTATACAAGTGGTAAAATATTCCTCACTTATGTTGGGAGAACCTGATAAAGAAACAA
TGATTAACAAATGCAAACATAAAGGAACTTCTTTAATTATTGGCGGAATAGAAGCAGCAG
AATCTGAATTCCCTCATCAAGCTCTTCTTGGTTATGATCGAGGACAATGGGTTTGCGGAG
GATCTTTGATTTCACCAAAATTTGTTTTAACAGCTGCTCATTGCATTCATTCAAATTATT
ATGGTGATGTAAAATTAGTCAAAGTTGGATTAAACGATCGTTCGCAAATTGAAGGAGTTT
TAACTTTTGGTGTTGCAAAAACTTTTAAGTATCCAGAATTTAATGAAATATTGCTCAATC
ATGATATTGCTTTGATAAAGTTAAACTCAACTGTTCGATTTAATGAATTTATTTTACCTA
TTTGCTTACCAACTAGAGATTATGACGAAAACAAAGCAATTGTTTCTGGGTTTGGCTCAA
TTGGAAATTATAATGGAGTTTCTGAAAAATTAATGAAAGTTACTCTAGAAAAGTTTTCTT
ATGAAGACTGTCAAAATTCTTTTGAACGATTGATTGATAAAAATACAATGTTATGCTATG
GACATCATACTGAGGAAAAAGATTCATGTTCC

>g14587.t2 Gene=g14587 Length=200
MLGEPDKETMINKCKHKGTSLIIGGIEAAESEFPHQALLGYDRGQWVCGGSLISPKFVLT
AAHCIHSNYYGDVKLVKVGLNDRSQIEGVLTFGVAKTFKYPEFNEILLNHDIALIKLNST
VRFNEFILPICLPTRDYDENKAIVSGFGSIGNYNGVSEKLMKVTLEKFSYEDCQNSFERL
IDKNTMLCYGHHTEEKDSCS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g14587.t2 CDD cd00190 Tryp_SPc 22 199 2.35271E-55
7 g14587.t2 Gene3D G3DSA:2.40.10.10 - 13 200 4.0E-46
2 g14587.t2 PANTHER PTHR24260 - 11 199 1.5E-39
5 g14587.t2 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 49 64 9.5E-10
4 g14587.t2 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 107 121 9.5E-10
3 g14587.t2 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 196 200 9.5E-10
1 g14587.t2 Pfam PF00089 Trypsin 22 199 3.4E-35
9 g14587.t2 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 59 64 -
11 g14587.t2 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 22 200 19.326
10 g14587.t2 SMART SM00020 trypsin_2 21 200 1.7E-29
6 g14587.t2 SUPERFAMILY SSF50494 Trypsin-like serine proteases 14 199 5.54E-50

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed