Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Coagulation factor X.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14587 g14587.t4 TSS g14587.t4 1420478 1420478
chr_4 g14587 g14587.t4 isoform g14587.t4 1420563 1422277
chr_4 g14587 g14587.t4 exon g14587.t4.exon1 1420563 1420781
chr_4 g14587 g14587.t4 exon g14587.t4.exon2 1420913 1421035
chr_4 g14587 g14587.t4 cds g14587.t4.CDS1 1420966 1421035
chr_4 g14587 g14587.t4 exon g14587.t4.exon3 1421101 1421169
chr_4 g14587 g14587.t4 cds g14587.t4.CDS2 1421101 1421169
chr_4 g14587 g14587.t4 exon g14587.t4.exon4 1421413 1421454
chr_4 g14587 g14587.t4 cds g14587.t4.CDS3 1421413 1421454
chr_4 g14587 g14587.t4 exon g14587.t4.exon5 1421551 1422047
chr_4 g14587 g14587.t4 cds g14587.t4.CDS4 1421551 1421945
chr_4 g14587 g14587.t4 exon g14587.t4.exon6 1422105 1422277
chr_4 g14587 g14587.t4 TTS g14587.t4 1422379 1422379

Sequences

>g14587.t4 Gene=g14587 Length=1123
CTTCGGGTGAAGCATGTACAACATTTGATGGTTCAAGAGGTGTTTGCAAACACGTTCAAA
GTTGTACAGAAATTGAAGAGTTAACAAAACTTCAGCCAAATGCCAAATTTACTCGTTGTG
ATCGTTTCAAAAGACTTGTTTGTTGTCCAATCAAAAATTTTTCTGCAGAAAATGAAAATA
AAATTTTTCAATCATCTTCTGTAAGAATCAGTGAAAGAAAATGTAGAGAATATGGAAAAA
GTGTTATACAAGTGGTAAAATATTCCTCACTTATGTTGGGAGAACCTGATAAAGAAACAA
TGATTAACAAATGCAAACATAAAGGAACTTCTTTAATTATTGGCGGAATAGAAGCAGCAG
AATCTGAATTCCCTCATCAAGCTCTTCTTGGTTATGATCGAGGACAATGGGTTTGCGGAG
GATCTTTGATTTCACCAAAATTTGTTTTAACAGTCAAAGTTGGATTAAACGATCGTTCGC
AAATTGAAGGAGTTTTAACTTTTGGTGTTGCAAAAACTTTTAAGTATCCAGAATTTAATG
AAATATTGCTCAATCATGATATTGCTTTGATAAAGTTAAACTCAACTGTTCGATTTAATG
AATTTATTTTACCTATTTGCTTACCAACTAGAGATTATGACGAAAACAAAGCAATTGTTT
CTGGGTTTGGCTCAATTGGAAATTATAATGGAGTTTCTGAAAAATTAATGAAAGTTACTC
TAGAAAAGTTTTCTTATGAAGACTGTCAAAATTCTTTTGAACGATTGATTGATAAAAATA
CAATGTTATGCTATGGACATCATACTGAGGAAAAAGATTCATGTTCCGTAACTATTTTTA
TTTCATAAACAGTTCAAACTCTATAAAATTAAGAAAAAGTTGATTTTTACTTTTAATTTA
TTAATAAAGTTCATTTTTTTCTGTTTTGATTGATTTTTAGGGTGATTCCGGTGGTCCTTT
GCAAATTTACAATAAAGAAGTCAATTGTACTTACATCCAGTTAGGAATTGTAAGTTTTGC
TTCTACGGATAGTTGTGGATGGGTAGATTTACCAGCAGTCTACGTCAAAGTATACAATTA
TCTCGATTGGATTGAAAATATTGTTTGGAATGTAGAAGATTAA

>g14587.t4 Gene=g14587 Length=191
MLGEPDKETMINKCKHKGTSLIIGGIEAAESEFPHQALLGYDRGQWVCGGSLISPKFVLT
VKVGLNDRSQIEGVLTFGVAKTFKYPEFNEILLNHDIALIKLNSTVRFNEFILPICLPTR
DYDENKAIVSGFGSIGNYNGVSEKLMKVTLEKFSYEDCQNSFERLIDKNTMLCYGHHTEE
KDSCSVTIFIS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g14587.t4 CDD cd00190 Tryp_SPc 22 184 0.000
7 g14587.t4 Gene3D G3DSA:2.40.10.10 - 22 60 0.000
6 g14587.t4 Gene3D G3DSA:2.40.10.10 - 61 114 0.000
5 g14587.t4 Gene3D G3DSA:2.40.10.10 - 115 185 0.000
2 g14587.t4 PANTHER PTHR24260 - 11 185 0.000
1 g14587.t4 Pfam PF00089 Trypsin 22 184 0.000
8 g14587.t4 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 22 184 14.727
4 g14587.t4 SMART SM00020 trypsin_2 21 188 0.000
3 g14587.t4 SUPERFAMILY SSF50494 Trypsin-like serine proteases 14 185 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed