Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14587 g14587.t5 TSS g14587.t5 1420478 1420478
chr_4 g14587 g14587.t5 isoform g14587.t5 1420563 1422277
chr_4 g14587 g14587.t5 exon g14587.t5.exon1 1420563 1420781
chr_4 g14587 g14587.t5 exon g14587.t5.exon2 1420913 1421035
chr_4 g14587 g14587.t5 cds g14587.t5.CDS1 1420966 1421035
chr_4 g14587 g14587.t5 exon g14587.t5.exon3 1421101 1421169
chr_4 g14587 g14587.t5 cds g14587.t5.CDS2 1421101 1421169
chr_4 g14587 g14587.t5 exon g14587.t5.exon4 1421483 1421924
chr_4 g14587 g14587.t5 cds g14587.t5.CDS3 1421483 1421544
chr_4 g14587 g14587.t5 exon g14587.t5.exon5 1422105 1422277
chr_4 g14587 g14587.t5 TTS g14587.t5 1422379 1422379

Sequences

>g14587.t5 Gene=g14587 Length=1026
CTTCGGGTGAAGCATGTACAACATTTGATGGTTCAAGAGGTGTTTGCAAACACGTTCAAA
GTTGTACAGAAATTGAAGAGTTAACAAAACTTCAGCCAAATGCCAAATTTACTCGTTGTG
ATCGTTTCAAAAGACTTGTTTGTTGTCCAATCAAAAATTTTTCTGCAGAAAATGAAAATA
AAATTTTTCAATCATCTTCTGTAAGAATCAGTGAAAGAAAATGTAGAGAATATGGAAAAA
GTGTTATACAAGTGGTAAAATATTCCTCACTTATGTTGGGAGAACCTGATAAAGAAACAA
TGATTAACAAATGCAAACATAAAGGAACTTCTTTAATTATTGGCGGAATAGAAGCAGCAG
AATCTGAATTCCCTCATCAAGCTCTTCTTGGTTATGATCGAGGACAATGGGTATTAAATA
AATGGTTTCTGCAGCTGCTCATTGCATTCATTCAAATTATTATGGTGATGTAAAATTAGT
CAAAGTTGGATTAAACGATCGTTCGCAAATTGAAGGAGTTTTAACTTTTGGTGTTGCAAA
AACTTTTAAGTATCCAGAATTTAATGAAATATTGCTCAATCATGATATTGCTTTGATAAA
GTTAAACTCAACTGTTCGATTTAATGAATTTATTTTACCTATTTGCTTACCAACTAGAGA
TTATGACGAAAACAAAGCAATTGTTTCTGGGTTTGGCTCAATTGGAAATTATAATGGAGT
TTCTGAAAAATTAATGAAAGTTACTCTAGAAAAGTTTTCTTATGAAGACTGTCAAAATTC
TTTTGAACGATTGATTGATAAAAATACAATGTTATGCTATGGACATCATACTGAGGAAAA
AGATTCATGTTCCGTGGTCCTTTGCAAATTTACAATAAAGAAGTCAATTGTACTTACATC
CAGTTAGGAATTGTAAGTTTTGCTTCTACGGATAGTTGTGGATGGGTAGATTTACCAGCA
GTCTACGTCAAAGTATACAATTATCTCGATTGGATTGAAAATATTGTTTGGAATGTAGAA
GATTAA

>g14587.t5 Gene=g14587 Length=66
MLGEPDKETMINKCKHKGTSLIIGGIEAAESEFPHQALLGYDRGQWVLNKWFLQLLIAFI
QIIMVM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g14587.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 47 -
4 g14587.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 48 65 -
2 g14587.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 66 66 -
1 g14587.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 46 65 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed