General information for g146.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative dTTP/UTP pyrophosphatase.
Parent gene
- The parent gene g146 is located on chr_3: 1337171..1337924 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g146 | g146.t1 | TTS | g146.t1 | 1337153 | 1337153 |
| chr_3 | g146 | g146.t1 | isoform | g146.t1 | 1337171 | 1337854 |
| chr_3 | g146 | g146.t1 | exon | g146.t1.exon1 | 1337171 | 1337710 |
| chr_3 | g146 | g146.t1 | cds | g146.t1.CDS1 | 1337171 | 1337710 |
| chr_3 | g146 | g146.t1 | exon | g146.t1.exon2 | 1337765 | 1337854 |
| chr_3 | g146 | g146.t1 | cds | g146.t1.CDS2 | 1337765 | 1337854 |
| chr_3 | g146 | g146.t1 | TSS | g146.t1 | 1337905 | 1337905 |
Sequences
>g146.t1 Gene=g146 Length=630
ATGTTGGGTCCTTTACGCAATCAAATAAAATCTGTGCGCTTCATTCTTGCAAGTAGCAGT
CCTAGACGTCAAGAATATATTAAAAATTTAGGAATCGATGCCGAATTATGTCCATCAACA
TTTGATGAAACTACAATCATTCCAACAGACTATAATTCATATGACGAATATGTAAAAGCA
ATTGCAAATGGAAAGGCAGAAGAAGTTGAAACAAGACTGCAAAATGACTTAAAAGACACG
AAATATTGCATCATTGGAGCTGACACAATTGTAACAATGAACAATAAAATTTACGGAAAA
CCAAAAGATGAAAATGATGCATTTCGAATTTTAAGTGAATTAAATGGTCAATCACATGTT
GTGTACACTGGATGTGTGCTTAAATTTAATGATAAAGTTTTGAAATTTAGCGAAAGCACA
AAAGTATTTTTTGGAAAATTAACAGAAGAGCAAATTAAGGCTTATATTGAAACCAAAGAA
CCTCTTGATAAAGCTGGAGCTTATGGAATTCAAGGTATAGGTGGATGTTTAATAGAGCGC
ATTGATGGAGACTATTTTAATGTTGTGGGCTTTCCCCTTTATCGAATTAGTGCAGAACTC
TGTAAGGCATTTAATTATGAAATAAAATAA
>g146.t1 Gene=g146 Length=209
MLGPLRNQIKSVRFILASSSPRRQEYIKNLGIDAELCPSTFDETTIIPTDYNSYDEYVKA
IANGKAEEVETRLQNDLKDTKYCIIGADTIVTMNNKIYGKPKDENDAFRILSELNGQSHV
VYTGCVLKFNDKVLKFSESTKVFFGKLTEEQIKAYIETKEPLDKAGAYGIQGIGGCLIER
IDGDYFNVVGFPLYRISAELCKAFNYEIK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g146.t1 | CDD | cd00555 | Maf | 14 | 200 | 0.00000 |
| 6 | g146.t1 | Gene3D | G3DSA:3.90.950.10 | - | 9 | 205 | 0.00000 |
| 4 | g146.t1 | Hamap | MF_00528 | dTTP/UTP pyrophosphatase. | 13 | 205 | 27.34693 |
| 2 | g146.t1 | PANTHER | PTHR43213 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED | 8 | 204 | 0.00000 |
| 3 | g146.t1 | PANTHER | PTHR43213:SF5 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED | 8 | 204 | 0.00000 |
| 7 | g146.t1 | PIRSF | PIRSF006305 | Maf | 5 | 209 | 0.00000 |
| 1 | g146.t1 | Pfam | PF02545 | Maf-like protein | 13 | 202 | 0.00000 |
| 5 | g146.t1 | SUPERFAMILY | SSF52972 | ITPase-like | 11 | 201 | 0.00000 |
| 9 | g146.t1 | TIGRFAM | TIGR00172 | maf: septum formation protein Maf | 13 | 197 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0047429 | nucleoside-triphosphate diphosphatase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
