General information for g146.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative dTTP/UTP pyrophosphatase.
Parent gene
- The parent gene g146 is located on chr_3: 1337171..1337924 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g146 | g146.t3 | TTS | g146.t3 | 1337153 | 1337153 |
| chr_3 | g146 | g146.t3 | isoform | g146.t3 | 1337171 | 1337924 |
| chr_3 | g146 | g146.t3 | exon | g146.t3.exon1 | 1337171 | 1337924 |
| chr_3 | g146 | g146.t3 | cds | g146.t3.CDS1 | 1337171 | 1337524 |
| chr_3 | g146 | g146.t3 | TSS | g146.t3 | 1337905 | 1337905 |
Sequences
>g146.t3 Gene=g146 Length=754
AGTTTTACTAAATTTTTCTTGTAGTGCTATTGTTTACAAAATATTTCGAATCATAAAAAT
TTAAGATATTATGTTGGGTCCTTTACGCAATCAAATAAAATCTGTGCGCTTCATTCTTGC
AAGTAGCAGTCCTAGACGTCAAGAATATATTAAAAATTTAGTAAGTCATTCAATAAAAAC
ATAAAAGCATGTGATTGAAATTTGATATTTTTAGGGAATCGATGCCGAATTATGTCCATC
AACATTTGATGAAACTACAATCATTCCAACAGACTATAATTCATATGACGAATATGTAAA
AGCAATTGCAAATGGAAAGGCAGAAGAAGTTGAAACAAGACTGCAAAATGACTTAAAAGA
CACGAAATATTGCATCATTGGAGCTGACACAATTGTAACAATGAACAATAAAATTTACGG
AAAACCAAAAGATGAAAATGATGCATTTCGAATTTTAAGTGAATTAAATGGTCAATCACA
TGTTGTGTACACTGGATGTGTGCTTAAATTTAATGATAAAGTTTTGAAATTTAGCGAAAG
CACAAAAGTATTTTTTGGAAAATTAACAGAAGAGCAAATTAAGGCTTATATTGAAACCAA
AGAACCTCTTGATAAAGCTGGAGCTTATGGAATTCAAGGTATAGGTGGATGTTTAATAGA
GCGCATTGATGGAGACTATTTTAATGTTGTGGGCTTTCCCCTTTATCGAATTAGTGCAGA
ACTCTGTAAGGCATTTAATTATGAAATAAAATAA
>g146.t3 Gene=g146 Length=117
MNNKIYGKPKDENDAFRILSELNGQSHVVYTGCVLKFNDKVLKFSESTKVFFGKLTEEQI
KAYIETKEPLDKAGAYGIQGIGGCLIERIDGDYFNVVGFPLYRISAELCKAFNYEIK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g146.t3 | CDD | cd00555 | Maf | 1 | 108 | 0 |
| 5 | g146.t3 | Gene3D | G3DSA:3.90.950.10 | - | 1 | 114 | 0 |
| 2 | g146.t3 | PANTHER | PTHR43213 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED | 1 | 112 | 0 |
| 3 | g146.t3 | PANTHER | PTHR43213:SF5 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED | 1 | 112 | 0 |
| 1 | g146.t3 | Pfam | PF02545 | Maf-like protein | 5 | 110 | 0 |
| 4 | g146.t3 | SUPERFAMILY | SSF52972 | ITPase-like | 2 | 109 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0047429 | nucleoside-triphosphate diphosphatase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
