Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1464 g1464.t32 TTS g1464.t32 11058577 11058577
chr_3 g1464 g1464.t32 isoform g1464.t32 11058703 11059664
chr_3 g1464 g1464.t32 exon g1464.t32.exon1 11058703 11058851
chr_3 g1464 g1464.t32 exon g1464.t32.exon2 11058984 11059664
chr_3 g1464 g1464.t32 cds g1464.t32.CDS1 11059296 11059664
chr_3 g1464 g1464.t32 TSS g1464.t32 11059694 11059694

Sequences

>g1464.t32 Gene=g1464 Length=830
ATGAAGTTCTTTATTTTAATAGTTTCCTTATTTGCTGCAGTGTCAGCTTTTCCCAATAGA
GAAGAAAGGATCGTTGGTGGCTCAGTCGCTAAACCTAATTCGCATCCTTTTGTTGTACTT
CTTGTTGTCAATTTACCAAATCATAATGATGCAATGTGCGGAGGCTCAATAATCAGCAAA
ACAGTCATTTTAACTGCTGCACATTGCCTGCAAGGTTCAATTTCAACAGAAGTTGCAGCT
GGTGTTCACGACATCACACATGAAGAACCAACACAACAACATATGACTGTTATGCCTCCT
CAATATCGCGTTCATAGCCAATTCAATCCAAGTATTAAAATTTTTGAATTTACTCAATTT
TTTGCCTAAAATTTCTTTTAAATTTAACAGAAAATTTTAATAATGATGTGGCTACTTTAA
TTTTACCCCATCAATTGACTCTCAATAAGTATGTCGCAACAATAACATTGGCAAAAGCAA
ATATAGGATTACTTGAAGGTGTAAATGCGATGTCGTTGGGTTGGGGAGACACAGTCAATG
GTGGACCTCATTCGAATGTCTTAAAAGAGGTTACGAATAAAATTATCAAAAATTCTGAAT
GTGTTCCACATTATACAGGTGGAATTGTTAATGCTGCTGCTATGTGTGTTGCTTCGACCA
ATAGAAATGGAATGTGAGTTTGTCCTTTGGTAATTGCCCAAGGCAGCAATCTTATACAAG
TTGGTATTGCAAGCTTCATTCCAACTCGTCCGAATACTTGTGGTGTAGTTCCTGCTGGTT
ACGCTCGAGTCAGTTCTTTTATTGCATGGATTGAAAGTCATATGAAATAA

>g1464.t32 Gene=g1464 Length=122
MKFFILIVSLFAAVSAFPNREERIVGGSVAKPNSHPFVVLLVVNLPNHNDAMCGGSIISK
TVILTAAHCLQGSISTEVAAGVHDITHEEPTQQHMTVMPPQYRVHSQFNPSIKIFEFTQF
FA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g1464.t32 Gene3D G3DSA:2.40.10.10 - 24 109 1.7E-19
2 g1464.t32 PANTHER PTHR24260 - 3 111 2.9E-19
3 g1464.t32 PANTHER PTHR24260:SF90 AT07769P-RELATED 3 111 2.9E-19
1 g1464.t32 Pfam PF00089 Trypsin 24 111 1.0E-15
8 g1464.t32 Phobius SIGNAL_PEPTIDE Signal peptide region 1 16 -
9 g1464.t32 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
10 g1464.t32 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 11 -
11 g1464.t32 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 12 16 -
7 g1464.t32 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 17 122 -
12 g1464.t32 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 64 69 -
13 g1464.t32 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 24 122 9.676
4 g1464.t32 SUPERFAMILY SSF50494 Trypsin-like serine proteases 19 111 1.77E-23
5 g1464.t32 SignalP_EUK SignalP-noTM SignalP-noTM 1 16 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

## Warning: Removed 1 row(s) containing missing values (geom_path).

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed