General information for g1464.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1464 is located on chr_3: 11059022..11059664 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1464 | g1464.t5 | TTS | g1464.t5 | 11058577 | 11058577 |
| chr_3 | g1464 | g1464.t5 | isoform | g1464.t5 | 11058703 | 11059274 |
| chr_3 | g1464 | g1464.t5 | exon | g1464.t5.exon1 | 11058703 | 11058851 |
| chr_3 | g1464 | g1464.t5 | cds | g1464.t5.CDS1 | 11058703 | 11058851 |
| chr_3 | g1464 | g1464.t5 | exon | g1464.t5.exon2 | 11058913 | 11058932 |
| chr_3 | g1464 | g1464.t5 | cds | g1464.t5.CDS2 | 11058913 | 11058932 |
| chr_3 | g1464 | g1464.t5 | exon | g1464.t5.exon3 | 11058992 | 11059274 |
| chr_3 | g1464 | g1464.t5 | cds | g1464.t5.CDS3 | 11058992 | 11059155 |
| chr_3 | g1464 | g1464.t5 | TSS | g1464.t5 | 11059694 | 11059694 |
Sequences
>g1464.t5 Gene=g1464 Length=452
AAAATTTTAATAATGATGTGGCTACTTTAATTTTACCCCATCAATTGACTCTCAATAAGT
ATGTCGCAACAATAACATTGGCAAAAGCAAATATAGGATTACTTGAAGGTGTAAATGCGA
TGTCGTTGGGTTGGGGAGACACAGTCAATGGTGGACCTCATTCGAATGTCTTAAAAGAGG
TTACGAATAAAATTATCAAAAATTCTGAATGTGTTCCACATTATACAGGTGGAATTGTTA
ATGCTGCTGCTATGTGTGTTGCTTCGACCAATAGAAATGGAATATGTGATGGTGATTCTG
GAGGTCCTTTGGTAATTGCCCAAGGCAGCAATCTTATACAAGTTGGTATTGCAAGCTTCA
TTCCAACTCGTCCGAATACTTGTGGTGTAGTTCCTGCTGGTTACGCTCGAGTCAGTTCTT
TTATTGCATGGATTGAAAGTCATATGAAATAA
>g1464.t5 Gene=g1464 Length=110
MSLGWGDTVNGGPHSNVLKEVTNKIIKNSECVPHYTGGIVNAAAMCVASTNRNGICDGDS
GGPLVIAQGSNLIQVGIASFIPTRPNTCGVVPAGYARVSSFIAWIESHMK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g1464.t5 | Gene3D | G3DSA:2.40.10.10 | - | 1 | 109 | 8.3E-25 |
| 2 | g1464.t5 | PANTHER | PTHR24256:SF485 | INACTIVE SERINE PROTEASE 54 | 3 | 110 | 4.2E-21 |
| 3 | g1464.t5 | PANTHER | PTHR24256 | TRYPTASE-RELATED | 3 | 110 | 4.2E-21 |
| 1 | g1464.t5 | Pfam | PF00089 | Trypsin | 3 | 105 | 2.7E-17 |
| 5 | g1464.t5 | ProSitePatterns | PS00135 | Serine proteases, trypsin family, serine active site. | 54 | 65 | - |
| 7 | g1464.t5 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 1 | 110 | 13.481 |
| 4 | g1464.t5 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 3 | 110 | 6.99E-26 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
