Gene loci information

Transcript annotation

  • This transcript has been annotated as Glycine N-methyltransferase .

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14646 g14646.t1 TSS g14646.t1 1694995 1694995
chr_4 g14646 g14646.t1 isoform g14646.t1 1695078 1696196
chr_4 g14646 g14646.t1 exon g14646.t1.exon1 1695078 1695408
chr_4 g14646 g14646.t1 cds g14646.t1.CDS1 1695078 1695408
chr_4 g14646 g14646.t1 exon g14646.t1.exon2 1695542 1695786
chr_4 g14646 g14646.t1 cds g14646.t1.CDS2 1695542 1695786
chr_4 g14646 g14646.t1 exon g14646.t1.exon3 1695927 1696196
chr_4 g14646 g14646.t1 cds g14646.t1.CDS3 1695927 1696196
chr_4 g14646 g14646.t1 TTS g14646.t1 1696215 1696215

Sequences

>g14646.t1 Gene=g14646 Length=846
ATGCCAGAATCTGAAAAAACAATGTTTACAAGTTCAACTGGAATTCCTGTAAGAGATCAA
TATGCAGATGGAAAAGCAGCCAAAGTTTGGGAAATTTTTATTGGCGATAAAAAATCAAGA
ACAAAGATTTATTGTGATTTTCTCGTGAATTTATTGCGTAGTCATGGATGTCATAGAATA
CTTGATGTAGCCTGCGGTACAGGTATTGACTCAATATTGCTTGTTGAAAAAGGTTTTGAA
GTAGTTTCATGTGATGCTTCTGATAAAATGCTTAAGTATGCAATAAAAGAACGTTGGAAT
CGACGAAAAGATTCTAGGTTTGATAATTGGATCATTGAAGAAGCAAACTGGTTAACATTG
AATGATGATATGCGCGAATATCTTCAAGGAGGCTTCGATGCTGTGATTTGTCTTGGAAAT
TCTTTTGGTCATATACTTGATAATTGTGAGCAGAAGCAAGCAATTAGAAATTTCGAAAGG
TGTTTGAAAACTGGAGGCCTTTTGATTATTGATCATAGAAATTATGACATAATTTGTAAT
GGTGGAAATGCTCCTAGCAAATCTATTTATTACAACAGTCAATACATGACAGATATTAAA
ACATCACTTCTCTATGTTAATGGAAAACCGACTAAAGTCACACTTGATTGTTTAATTACA
ACTGATGATGGAATAAAGTATGAATTTGGTTTAAGTTCTTATCCACATCAACTGGAAGAA
TTCAAGAAAATTTTAAAGGAAATCTTTGGTTATGGATGTTATCATAAAATTTTAGGTGAT
TTTAAGGAAATTAATTCTAATTATACTCCTGGCTTTTATATTCATGTTATTGAAAAGTCT
AAATAA

>g14646.t1 Gene=g14646 Length=281
MPESEKTMFTSSTGIPVRDQYADGKAAKVWEIFIGDKKSRTKIYCDFLVNLLRSHGCHRI
LDVACGTGIDSILLVEKGFEVVSCDASDKMLKYAIKERWNRRKDSRFDNWIIEEANWLTL
NDDMREYLQGGFDAVICLGNSFGHILDNCEQKQAIRNFERCLKTGGLLIIDHRNYDIICN
GGNAPSKSIYYNSQYMTDIKTSLLYVNGKPTKVTLDCLITTDDGIKYEFGLSSYPHQLEE
FKKILKEIFGYGCYHKILGDFKEINSNYTPGFYIHVIEKSK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g14646.t1 CDD cd02440 AdoMet_MTases 59 170 0.000
4 g14646.t1 Gene3D G3DSA:3.30.46.10 - 19 234 0.000
5 g14646.t1 Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 34 279 0.000
2 g14646.t1 PANTHER PTHR16458 GLYCINE N-METHYLTRANSFERASE 17 279 0.000
7 g14646.t1 PIRSF PIRSF000385 Gly_N-mtase 5 281 0.000
1 g14646.t1 Pfam PF13649 Methyltransferase domain 60 166 0.000
6 g14646.t1 ProSiteProfiles PS51600 Glycine N-methyltransferase (EC 2.1.1.20 and EC 2.1.1.156) family profile. 1 281 121.526
3 g14646.t1 SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases 19 248 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0017174 glycine N-methyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed