General information for g14725.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14725 is located on chr_4: 2029512..2030183 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14725 | g14725.t4 | isoform | g14725.t4 | 2028846 | 2029856 |
| chr_4 | g14725 | g14725.t4 | exon | g14725.t4.exon1 | 2028846 | 2029030 |
| chr_4 | g14725 | g14725.t4 | exon | g14725.t4.exon2 | 2029152 | 2029380 |
| chr_4 | g14725 | g14725.t4 | exon | g14725.t4.exon3 | 2029453 | 2029856 |
| chr_4 | g14725 | g14725.t4 | cds | g14725.t4.CDS1 | 2029512 | 2029688 |
| chr_4 | g14725 | g14725.t4 | TSS | g14725.t4 | 2030446 | 2030446 |
| chr_4 | g14725 | g14725.t4 | TTS | g14725.t4 | NA | NA |
Sequences
>g14725.t4 Gene=g14725 Length=818
CTTGCATCAGTACCAGATGAACTACCAATATCAGAACCACAAAAAACACCAGAACAACTT
TTATCAGTAACTCAAGAACCGCAAAAACCACAAGAAGAACAAACCAAACAAGTTCAAGAA
GAAACTTCCATTCAATCACAACCAGAACCAAAGATTGAAAACACAAACATGATTAAAATT
TCAGAATCATTTTTATATAAAAAATACTTCAAAATGGTCAAATTTGGTGTTCATACACAA
GCAGTGAAAAATAAAATGAACTCAGAAGGTCTTGATGCAAATTTACTTGACAATCCAGAT
TTGATGATTGAAAAATGTCCAGAGGATGAAGAAATTGAAGAATAAAATTTTTAATTTCTC
TTAAAATATTCATCAAAAAGTTGCTGTAGATCGTCATTATAACTTTCAATATATTGCTTA
TCCTTTGTATTTTCATAACTCCTTAAATATGGCAGTTGTAGCATTTTTTCAGGAAAAATT
TTTAATGTATAAATCCAGCATGGAATTTTCTCCCCATTTGCATTAATTTCTTGAATTTCA
CGATCATACCATGATGGATAATCTTCAAGTTTATCTAATACTGCAAACATTTTTTCGTCT
ACTTCAAATATTTCGCCACTTATTTGATTGCCTATGCCAGGACGATTTAATAAAAATGGA
ATATTATATCTAGTAGCAACAACAAGGGGAAAAGAAACGATAGTTTCTCCAATTGTTATA
AATTTGGAATATCCATTAGATTTATCAGTCATTAAATAATGATTTGGTTGTCCACGTTTG
AGTGTCCCATAAACAAAAACTTTGATCAATTTTGTCAT
>g14725.t4 Gene=g14725 Length=58
MIKISESFLYKKYFKMVKFGVHTQAVKNKMNSEGLDANLLDNPDLMIEKCPEDEEIEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g14725.t4 | Pfam | PF10152 | Subunit CCDC53 of WASH complex | 3 | 41 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0071203 | WASH complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
