General information for g14734.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Carnitine O-acetyltransferase.
Parent gene
- The parent gene g14734 is located on chr_4: 2065301..2066700 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14734 | g14734.t1 | TSS | g14734.t1 | 2062984 | 2062984 |
| chr_4 | g14734 | g14734.t1 | isoform | g14734.t1 | 2063405 | 2066222 |
| chr_4 | g14734 | g14734.t1 | exon | g14734.t1.exon1 | 2063405 | 2063801 |
| chr_4 | g14734 | g14734.t1 | cds | g14734.t1.CDS1 | 2063405 | 2063801 |
| chr_4 | g14734 | g14734.t1 | exon | g14734.t1.exon2 | 2064481 | 2065074 |
| chr_4 | g14734 | g14734.t1 | cds | g14734.t1.CDS2 | 2064481 | 2065074 |
| chr_4 | g14734 | g14734.t1 | exon | g14734.t1.exon3 | 2065304 | 2065984 |
| chr_4 | g14734 | g14734.t1 | cds | g14734.t1.CDS3 | 2065304 | 2065984 |
| chr_4 | g14734 | g14734.t1 | exon | g14734.t1.exon4 | 2066044 | 2066222 |
| chr_4 | g14734 | g14734.t1 | cds | g14734.t1.CDS4 | 2066044 | 2066222 |
| chr_4 | g14734 | g14734.t1 | TTS | g14734.t1 | 2066723 | 2066723 |
Sequences
>g14734.t1 Gene=g14734 Length=1851
ATGTCATCAAAAGTTATTACTACAAGCTACTCAAGCATCACAAATCCTCAAAATCTTCCT
CATCTTCCTGTTCCTAAGCTCAATGATACTTTGAAAAAGTTTCTTGATACTGCCGAACCT
CATCTGAGTCCAGCATCATTTGAAAATACAAAAAATGTTGTACGTGAATTTGCAAAGTCT
GGAGGAGTTGGTGAAAAATTGCAAAACTTGTTGGAAAAGAGAGCAAGTGAAAAAGAGAAT
TGGTTATCTGATCCATCATCTAATTGGTGGTTACAATGTGCTTATTTACAATATAGAGAT
CCAGTAGTTGTCTGGTCATCACCTGGATTAGTTTTTCCTCAAAGGAAATTTGAAACAAAT
GAGGATAGAGTAAAATATGCTGCTCAAGTTATTTATTCCTCACTACTTTTTAAACAGCAA
ATCGACAACAATCAAATTCCAGTCGAAAAAATGGGTAAAAGTGAACTCGATATGCAGCAA
TATAAAAATGTTTTTGGCACTTGTCGCATTCCTGGAACACCTGGTGATTCAATAGAATTT
AATCGTGATTCAAAACATATAGTTATAGTCATTAATGACACATTCTTCAAAGTGCCTGTT
TATAATAGTGAAGGTGCCATTCTTGGTGAAAATCAACTCTATGAGCAAATTCAACTTTGC
ATGAATGAAGCATTAAAAATTAAAAATCCGCTCAAAATTGGAGTTCTTACTTCTGATAAT
CGCGACAATTGGGCAAAAGCTTACGCTGAATTAATCAAAAATCCTAAGAACGTTGCATCA
TTGAATGAAATTCAAACATCACTTTTTCTCATGTGCATTGATAGAGAAACACCGCAAATC
GAAGACGATATTGTAACTGCTGAGCATCTGTTTGTAACTGGTGCTGGATCAAGATTTAAT
TCAGCTAATCGTTGGTATGACAAGACTATACAATTTATTGTTGGAACTAGAGGAATCAAT
GGACTGACTTACGAACATTCACCTGCAGAAGGTGGACCTCTTGCAGTCTTAACTGACAAT
GTCATCAAATACGTAAATGATCAAGAATCTGGAAAAACACGTGTTGCTATTGGCACTGGA
AATTTTGAAAAACCCCAAATGCTTGAATTTGATTCATCACCTCAAATTGAAGAATGTATT
AAAATTTCATCAGAAAACATTGATAAACTTGCAGGAAATATTGATATGAATTACCTGCAC
TTTACTGATTATGGAAAAAATTTCATCAAAAGTCAAAAATTCTCGCCTGATTCTTTCATT
CAAATGGCAATTCAATTTGCTTTTTATCGTCTCCATCATGTTCCAGGTGCTCATTATGAA
AGTGCTGGTACAAGACTTTATGTTCATGGTCGTACTGAATGCATTCGATCATGCTCTAAA
GAATCTGTGGCATTTTCTAAAGCCATGGTTGAATCAAAAGATGATAAAGAAAAATTGATA
AGAATGAAAGAAGCAATTGAGTCACATAAAAAATATGTAAGTCAAGCAGTTCAAGGTTTT
GGTATTGATCGTCATCTTTTGGGTTTAAAATTGATTGCTAGAGAAAATGGCATTGAAATT
CCGGAATTATATTCTGATGAAGGCTATGTGAAGTCGTCAACTTATAGACTCAGCACAAGC
CAAGTTGCATCAATTTATGATGCATTCATGTGCTATGGGCCACTTACTCATGATGGCTAT
GGCTGCTGCTATTCACCTAGAAATAACGATATTTATTTTGGATTATCAAGCATGAGAAAT
AATAGCGAAACAAGCACTGCTAAATTCAAGAAAAGTTTGCAAGAAGCGCTTCAGTTAATG
AGAGATGTTTTGATTAAAGTTGGAGAACAGCCAATTAAGAGCAAACTTTAA
>g14734.t1 Gene=g14734 Length=616
MSSKVITTSYSSITNPQNLPHLPVPKLNDTLKKFLDTAEPHLSPASFENTKNVVREFAKS
GGVGEKLQNLLEKRASEKENWLSDPSSNWWLQCAYLQYRDPVVVWSSPGLVFPQRKFETN
EDRVKYAAQVIYSSLLFKQQIDNNQIPVEKMGKSELDMQQYKNVFGTCRIPGTPGDSIEF
NRDSKHIVIVINDTFFKVPVYNSEGAILGENQLYEQIQLCMNEALKIKNPLKIGVLTSDN
RDNWAKAYAELIKNPKNVASLNEIQTSLFLMCIDRETPQIEDDIVTAEHLFVTGAGSRFN
SANRWYDKTIQFIVGTRGINGLTYEHSPAEGGPLAVLTDNVIKYVNDQESGKTRVAIGTG
NFEKPQMLEFDSSPQIEECIKISSENIDKLAGNIDMNYLHFTDYGKNFIKSQKFSPDSFI
QMAIQFAFYRLHHVPGAHYESAGTRLYVHGRTECIRSCSKESVAFSKAMVESKDDKEKLI
RMKEAIESHKKYVSQAVQGFGIDRHLLGLKLIARENGIEIPELYSDEGYVKSSTYRLSTS
QVASIYDAFMCYGPLTHDGYGCCYSPRNNDIYFGLSSMRNNSETSTAKFKKSLQEALQLM
RDVLIKVGEQPIKSKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14734.t1 | Gene3D | G3DSA:3.30.559.40 | - | 18 | 601 | 0 |
| 6 | g14734.t1 | Gene3D | G3DSA:3.30.559.70 | - | 80 | 397 | 0 |
| 2 | g14734.t1 | PANTHER | PTHR22589:SF103 | CARNITINE O-ACETYL-TRANSFERASE, ISOFORM A | 13 | 608 | 0 |
| 3 | g14734.t1 | PANTHER | PTHR22589 | CARNITINE O-ACYLTRANSFERASE | 13 | 608 | 0 |
| 1 | g14734.t1 | Pfam | PF00755 | Choline/Carnitine o-acyltransferase | 19 | 600 | 0 |
| 5 | g14734.t1 | SUPERFAMILY | SSF52777 | CoA-dependent acyltransferases | 17 | 391 | 0 |
| 4 | g14734.t1 | SUPERFAMILY | SSF52777 | CoA-dependent acyltransferases | 394 | 605 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00624 (carnitine O-acetyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
