General information for g14734.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Choline O-acetyltransferase.
Parent gene
- The parent gene g14734 is located on chr_4: 2065301..2066700 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g14734 | g14734.t5 | isoform | g14734.t5 | 2065079 | 2066700 |
| chr_4 | g14734 | g14734.t5 | exon | g14734.t5.exon1 | 2065079 | 2066700 |
| chr_4 | g14734 | g14734.t5 | cds | g14734.t5.CDS1 | 2065411 | 2066016 |
| chr_4 | g14734 | g14734.t5 | TTS | g14734.t5 | 2066723 | 2066723 |
| chr_4 | g14734 | g14734.t5 | TSS | g14734.t5 | NA | NA |
Sequences
>g14734.t5 Gene=g14734 Length=1622
ATTATCAAAAATAATTTAACTGGATTAATAATATTTTAATCCATTTCGTTTAAATTAAGA
TTTTTAAATCGAGAGATTAATAATAAATTTAATGATTTATATCCAAAGATTAAAATTTTT
TAAAACCTTTAAAAAATAATTTTAAAAAGTAATTTAAAAAAATTAATTTTTTTTGGTAAA
AAATTATTATAAAAAACTAATAAATTATTTTAAAAAATATTTTAGGTGGACCTCTTGCAG
TCTTAACTGACAATGTCATCAAATACGTAAATGATCAAGAATCTGGAAAAACACGTGTTG
CTATTGGCACTGGAAATTTTGAAAAACCCCAAATGCTTGAATTTGATTCATCACCTCAAA
TTGAAGAATGTATTAAAATTTCATCAGAAAACATTGATAAACTTGCAGGAAATATTGATA
TGAATTACCTGCACTTTACTGATTATGGAAAAAATTTCATCAAAAGTCAAAAATTCTCGC
CTGATTCTTTCATTCAAATGGCAATTCAATTTGCTTTTTATCGTCTCCATCATGTTCCAG
GTGCTCATTATGAAAGTGCTGGTACAAGACTTTATGTTCATGGTCGTACTGAATGCATTC
GATCATGCTCTAAAGAATCTGTGGCATTTTCTAAAGCCATGGTTGAATCAAAAGATGATA
AAGAAAAATTGATAAGAATGAAAGAAGCAATTGAGTCACATAAAAAATATGTAAGTCAAG
CAGTTCAAGGTTTTGGTATTGATCGTCATCTTTTGGGTTTAAAATTGATTGCTAGAGAAA
ATGGCATTGAAATTCCGGAATTATATTCTGATGAAGGCTATGTGAAGTCGTCAACTTATA
GACTCAGCACAAGCCAAGTTGCATCAATTTATGATGCATTCATGTGCTATGGGCCACTTA
CTCATGGTATATATATTTTTATTTATCTGTATTTTTAAAATATTTTATAATTTTATTTTT
AATAGATGGCTATGGCTGCTGCTATTCACCTAGAAATAACGATATTTATTTTGGATTATC
AAGCATGAGAAATAATAGCGAAACAAGCACTGCTAAATTCAAGAAAAGTTTGCAAGAAGC
GCTTCAGTTAATGAGAGATGTTTTGATTAAAGTTGGAGAACAGCCAATTAAGAGCAAACT
TTAAAAAACTTAATTTTAGAAAAACATTTTTTATACTTACATTGTAAAAGAAGAATTTAA
ATTTTATACAAATTGAACATAAGGCGATATTCTATTTCGATAAAGTTTTTCACAGAATAA
ATTTTAATTTAGACAAAATTTTGAAAGTACGAACAGAAATCAAATTTTTCTTAAAATTTA
TTTAAAAATTGTAGCAAATTTTATCTATAGAATGAAATATTTGTTGTCAATCTTAATTTT
CAATCTGATGAAATTTTCTGGTTTCACAATTTAATTGGTGAAGACTTTTTTAACTTTCTA
AAATTTTTAATCTTAATGATTATTTCGTTGTAAAGAAGTGATATAATTTTGAATCGTATA
AAGCTGATTGTATATTTTTACATCTCACTGCAAGTTCTAAAATATTTACTTAAACTCTGT
ACTTTCTGATATTTTTTGTTCTATTTTTATAAAAATAAATTGGTGATATGGGCAAAAATA
AA
>g14734.t5 Gene=g14734 Length=201
MLEFDSSPQIEECIKISSENIDKLAGNIDMNYLHFTDYGKNFIKSQKFSPDSFIQMAIQF
AFYRLHHVPGAHYESAGTRLYVHGRTECIRSCSKESVAFSKAMVESKDDKEKLIRMKEAI
ESHKKYVSQAVQGFGIDRHLLGLKLIARENGIEIPELYSDEGYVKSSTYRLSTSQVASIY
DAFMCYGPLTHGIYIFIYLYF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14734.t5 | Gene3D | G3DSA:3.30.559.40 | - | 3 | 201 | 0 |
| 2 | g14734.t5 | PANTHER | PTHR22589:SF103 | CARNITINE O-ACETYL-TRANSFERASE, ISOFORM A | 2 | 198 | 0 |
| 3 | g14734.t5 | PANTHER | PTHR22589 | CARNITINE O-ACYLTRANSFERASE | 2 | 198 | 0 |
| 1 | g14734.t5 | Pfam | PF00755 | Choline/Carnitine o-acyltransferase | 2 | 199 | 0 |
| 4 | g14734.t5 | SUPERFAMILY | SSF52777 | CoA-dependent acyltransferases | 28 | 191 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
