Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Choline O-acetyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14734 g14734.t6 isoform g14734.t6 2065079 2066700
chr_4 g14734 g14734.t6 exon g14734.t6.exon1 2065079 2066065
chr_4 g14734 g14734.t6 cds g14734.t6.CDS1 2065411 2066016
chr_4 g14734 g14734.t6 exon g14734.t6.exon2 2066257 2066700
chr_4 g14734 g14734.t6 TTS g14734.t6 2066723 2066723
chr_4 g14734 g14734.t6 TSS g14734.t6 NA NA

Sequences

>g14734.t6 Gene=g14734 Length=1431
ATTATCAAAAATAATTTAACTGGATTAATAATATTTTAATCCATTTCGTTTAAATTAAGA
TTTTTAAATCGAGAGATTAATAATAAATTTAATGATTTATATCCAAAGATTAAAATTTTT
TAAAACCTTTAAAAAATAATTTTAAAAAGTAATTTAAAAAAATTAATTTTTTTTGGTAAA
AAATTATTATAAAAAACTAATAAATTATTTTAAAAAATATTTTAGGTGGACCTCTTGCAG
TCTTAACTGACAATGTCATCAAATACGTAAATGATCAAGAATCTGGAAAAACACGTGTTG
CTATTGGCACTGGAAATTTTGAAAAACCCCAAATGCTTGAATTTGATTCATCACCTCAAA
TTGAAGAATGTATTAAAATTTCATCAGAAAACATTGATAAACTTGCAGGAAATATTGATA
TGAATTACCTGCACTTTACTGATTATGGAAAAAATTTCATCAAAAGTCAAAAATTCTCGC
CTGATTCTTTCATTCAAATGGCAATTCAATTTGCTTTTTATCGTCTCCATCATGTTCCAG
GTGCTCATTATGAAAGTGCTGGTACAAGACTTTATGTTCATGGTCGTACTGAATGCATTC
GATCATGCTCTAAAGAATCTGTGGCATTTTCTAAAGCCATGGTTGAATCAAAAGATGATA
AAGAAAAATTGATAAGAATGAAAGAAGCAATTGAGTCACATAAAAAATATGTAAGTCAAG
CAGTTCAAGGTTTTGGTATTGATCGTCATCTTTTGGGTTTAAAATTGATTGCTAGAGAAA
ATGGCATTGAAATTCCGGAATTATATTCTGATGAAGGCTATGTGAAGTCGTCAACTTATA
GACTCAGCACAAGCCAAGTTGCATCAATTTATGATGCATTCATGTGCTATGGGCCACTTA
CTCATGGTATATATATTTTTATTTATCTGTATTTTTAAAATATTTTATAATTTTATTTTT
AATAGATGGCTATGGCTGCTGCTATTCACATTGTAAAAGAAGAATTTAAATTTTATACAA
ATTGAACATAAGGCGATATTCTATTTCGATAAAGTTTTTCACAGAATAAATTTTAATTTA
GACAAAATTTTGAAAGTACGAACAGAAATCAAATTTTTCTTAAAATTTATTTAAAAATTG
TAGCAAATTTTATCTATAGAATGAAATATTTGTTGTCAATCTTAATTTTCAATCTGATGA
AATTTTCTGGTTTCACAATTTAATTGGTGAAGACTTTTTTAACTTTCTAAAATTTTTAAT
CTTAATGATTATTTCGTTGTAAAGAAGTGATATAATTTTGAATCGTATAAAGCTGATTGT
ATATTTTTACATCTCACTGCAAGTTCTAAAATATTTACTTAAACTCTGTACTTTCTGATA
TTTTTTGTTCTATTTTTATAAAAATAAATTGGTGATATGGGCAAAAATAAA

>g14734.t6 Gene=g14734 Length=201
MLEFDSSPQIEECIKISSENIDKLAGNIDMNYLHFTDYGKNFIKSQKFSPDSFIQMAIQF
AFYRLHHVPGAHYESAGTRLYVHGRTECIRSCSKESVAFSKAMVESKDDKEKLIRMKEAI
ESHKKYVSQAVQGFGIDRHLLGLKLIARENGIEIPELYSDEGYVKSSTYRLSTSQVASIY
DAFMCYGPLTHGIYIFIYLYF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g14734.t6 Gene3D G3DSA:3.30.559.70 - 2 31 0
6 g14734.t6 Gene3D G3DSA:3.30.559.40 - 32 198 0
2 g14734.t6 PANTHER PTHR22589:SF103 CARNITINE O-ACETYL-TRANSFERASE, ISOFORM A 2 198 0
3 g14734.t6 PANTHER PTHR22589 CARNITINE O-ACYLTRANSFERASE 2 198 0
1 g14734.t6 Pfam PF00755 Choline/Carnitine o-acyltransferase 2 199 0
4 g14734.t6 SUPERFAMILY SSF52777 CoA-dependent acyltransferases 28 191 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016746 acyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed