Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Peroxisomal carnitine O-octanoyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g14734 g14734.t7 isoform g14734.t7 2065301 2066700
chr_4 g14734 g14734.t7 exon g14734.t7.exon1 2065301 2065434
chr_4 g14734 g14734.t7 cds g14734.t7.CDS1 2065349 2065434
chr_4 g14734 g14734.t7 exon g14734.t7.exon2 2065506 2065708
chr_4 g14734 g14734.t7 cds g14734.t7.CDS2 2065506 2065708
chr_4 g14734 g14734.t7 exon g14734.t7.exon3 2065980 2066074
chr_4 g14734 g14734.t7 cds g14734.t7.CDS3 2065980 2066071
chr_4 g14734 g14734.t7 exon g14734.t7.exon4 2066269 2066700
chr_4 g14734 g14734.t7 TTS g14734.t7 2066723 2066723
chr_4 g14734 g14734.t7 TSS g14734.t7 NA NA

Sequences

>g14734.t7 Gene=g14734 Length=864
TAGGTGGACCTCTTGCAGTCTTAACTGACAATGTCATCAAATACGTAAATGATCAAGAAT
CTGGAAAAACACGTGTTGCTATTGGCACTGGAAATTTTGAAAAACCCCAAATGCTTGAAT
TTGATTCATCACCTCCTGCACTTTACTGATTATGGAAAAAATTTCATCAAAAGTCAAAAA
TTCTCGCCTGATTCTTTCATTCAAATGGCAATTCAATTTGCTTTTTATCGTCTCCATCAT
GTTCCAGGTGCTCATTATGAAAGTGCTGGTACAAGACTTTATGTTCATGGTCGTACTGAA
TGCATTCGATCATGCTCTAAAGAATCTGTGGCATTTTTCATGGTATATATATTTTTATTT
ATCTGTATTTTTAAAATATTTTATAATTTTATTTTTAATAGATGGCTATGGCTGCTGCTA
TTCACCTAGAAAAAGAATTTAAATTTTATACAAATTGAACATAAGGCGATATTCTATTTC
GATAAAGTTTTTCACAGAATAAATTTTAATTTAGACAAAATTTTGAAAGTACGAACAGAA
ATCAAATTTTTCTTAAAATTTATTTAAAAATTGTAGCAAATTTTATCTATAGAATGAAAT
ATTTGTTGTCAATCTTAATTTTCAATCTGATGAAATTTTCTGGTTTCACAATTTAATTGG
TGAAGACTTTTTTAACTTTCTAAAATTTTTAATCTTAATGATTATTTCGTTGTAAAGAAG
TGATATAATTTTGAATCGTATAAAGCTGATTGTATATTTTTACATCTCACTGCAAGTTCT
AAAATATTTACTTAAACTCTGTACTTTCTGATATTTTTTGTTCTATTTTTATAAAAATAA
ATTGGTGATATGGGCAAAAATAAA

>g14734.t7 Gene=g14734 Length=126
MIKNLEKHVLLLALEILKNPKCLNLIHHLLHFTDYGKNFIKSQKFSPDSFIQMAIQFAFY
RLHHVPGAHYESAGTRLYVHGRTECIRSCSKESVAFFMVYIFLFICIFKIFYNFIFNRWL
WLLLFT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g14734.t7 Gene3D G3DSA:3.30.559.40 - 29 97 7.1E-33
2 g14734.t7 PANTHER PTHR22589:SF103 CARNITINE O-ACETYL-TRANSFERASE, ISOFORM A 26 97 2.4E-28
3 g14734.t7 PANTHER PTHR22589 CARNITINE O-ACYLTRANSFERASE 26 97 2.4E-28
1 g14734.t7 Pfam PF00755 Choline/Carnitine o-acyltransferase 27 97 5.1E-31
7 g14734.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 93 -
9 g14734.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 94 115 -
8 g14734.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 116 126 -
5 g14734.t7 SUPERFAMILY SSF52777 CoA-dependent acyltransferases 27 97 8.34E-29
4 g14734.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 94 116 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016746 acyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed